HHSEARCH alignment of GI: 254780610 and SCOP domain: d2apoa2

Alignment
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=96.78  E-value=0.00037  Score=41.87  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             CCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             40278996240111045678754210022222210244334444364324444332324057212035788889999972
Q gi|254780610|r   96 DDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDH  175 (340)
Q Consensus        96 D~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~  175 (340)
                      ...+++||||.|+.+|        .+++.+...++.        .+.|-..-||-..||||++|-+..+  .+...|.  
T Consensus        28 ~~G~l~idKP~G~TS~--------~vv~~ikk~l~~--------kKvGH~GTLDP~AtGvL~v~iG~aT--Kl~~~~~--   87 (230)
T d2apoa2          28 KYGVVVVDKPRGPTSH--------EVSTWVKKILNL--------DKAGHGGTLDPKVTGVLPVALERAT--KTIPMWH--   87 (230)
T ss_dssp             HTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTT--
T ss_pred             CCCEEEEECCCCCCHH--------HHHHHHHHHCCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHH--
T ss_conf             6828999789989889--------999999997187--------8877665467201246666533888--9999984--


Q ss_pred             CCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf             11322133445432024332332110
Q gi|254780610|r  176 GKSTRLKRAYYAMVWGIPLPDSGIIN  201 (340)
Q Consensus       176 ~~~~~v~K~Y~Aiv~G~~~~~~g~i~  201 (340)
                          .-.|+|.|.+.=....+...|.
T Consensus        88 ----~~~K~Y~~~~~~g~~t~~~di~  109 (230)
T d2apoa2          88 ----IPPKEYVCLMHLHRDASEEDIL  109 (230)
T ss_dssp             ----SSCEEEEEEEEESSCCCHHHHH
T ss_pred             ----CCCCEEEEEEEEECCCCHHHHH
T ss_conf             ----1684599999961343076798


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Archaeon Methanococcus jannaschii [TaxId: 2190]