HHSEARCH alignment of GI: 254780610 and SCOP domain: d2gy9d1

Alignment

Probab=98.12  E-value=1.8e-06  Score=55.56  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=47.7

Q ss_pred             HCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf             3687578999987176889899999998599049989932867580489889997
Q gi|254780610|r   20 TAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT   74 (340)
Q Consensus        20 ~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~   74 (340)
                      .-++|||..+-+. .-.-|+.+++++|..|.|.|||+++.-|++.|++||.|.+.
T Consensus        91 ~LE~RLDnvv~R~-gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvk  144 (204)
T d2gy9d1          91 LLEGRLDNVVYRM-GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR  144 (204)
T ss_dssp             HHTTBHHHHHHHH-TSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEEC
T ss_pred             HHHHHHHHHHHHC-CCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEEC
T ss_conf             9999888887605-62024899999998511641988997500760589778862

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Escherichia coli [TaxId: 562]