BLAST/PSIBLAST alignment of GI: 254780610 and GI: 116253506 at iteration 1
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium leguminosarum bv. viciae 3841] Length = 341
>gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D [Rhizobium leguminosarum bv. viciae 3841] Length = 341
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/341 (55%), Positives = 241/341 (70%), Gaps = 4/341 (1%)
Query: 1 MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN 60
M + + L +D TAEGR+D WL + E+FSRS +K LI +G + + G +
Sbjct: 1 MSDPFKQAAGNRKVLTADETAEGRLDAWLTAQVGEEFSRSRIKALIKDGQVLLRGEPVTD 60
Query: 61 PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT 120
P RKV GDSF +T+P + E+IPLDIL+EDDD+IVI+KP+GLVVHP GNWTGT
Sbjct: 61 PQRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGT 120
Query: 121 LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180
LVNAL++HC + LS I GV+RPGIVHRLDKDTTGVMVVAKND+AH+ LS QF DHG++
Sbjct: 121 LVNALIHHCSDTLSGIGGVRRPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMP 180
Query: 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKN 240
L+RAY A+VWG P SG ++APLGR +R RRAVK D + AD AITHYQ IE +++
Sbjct: 181 LERAYQAIVWGRPRTLSGTVDAPLGRATGDRTRRAVKRPDSQDADEAITHYQVIERFHEK 240
Query: 241 SN---FAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAIL 297
+ FA SL++C LETGRTHQIRVHMAH G+PL+GD +YG GFKTKAN++ + +
Sbjct: 241 PDATAFA-SLVECRLETGRTHQIRVHMAHIGHPLLGDTVYGAGFKTKANLLPEEIRKVVN 299
Query: 298 SLARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLN 338
RQALHA L F HPR + M F+VP+P+DM+ ++ L
Sbjct: 300 GFGRQALHAFMLQFEHPRTGEIMHFEVPLPDDMVELVEALR 340