BLAST/PSIBLAST alignment of GI: 254780610 and GI: 86358939 at iteration 1
>gi|86358939|ref|YP_470831.1| pseudouridylate synthase, ribosomal large subunit D protein [Rhizobium etli CFN 42] Length = 354
>gi|86283041|gb|ABC92104.1| pseudouridylate synthase, ribosomal large subunit D protein [Rhizobium etli CFN 42] Length = 354
 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/334 (56%), Positives = 241/334 (72%), Gaps = 2/334 (0%)

Query: 7   NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVV 66
             + I+  L +D TAEGR+D WL   + E FSRS +K LI +G +S+ G    +P RKV 
Sbjct: 20  QAAGIRKVLTADETAEGRLDAWLTAQVGEDFSRSRIKALIKDGQVSLRGEQVTDPQRKVR 79

Query: 67  PGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALL 126
            GDSF IT+P  +      E+IPL+IL+EDDD+IVI+KPAGLVVHP  GNWTGTLVNAL+
Sbjct: 80  VGDSFEITLPEPEDPTPKGEDIPLEILHEDDDLIVISKPAGLVVHPGSGNWTGTLVNALI 139

Query: 127 YHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYY 186
           +HC + LS I GV+RPGIVHRLDKDTTGVMVVAKND+AH+ LS QF DHG++  L+RAY 
Sbjct: 140 HHCGDTLSGIGGVRRPGIVHRLDKDTTGVMVVAKNDVAHRHLSLQFADHGRTMPLERAYR 199

Query: 187 AMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFA-- 244
           A+VWG P   SG I+APLGR   +R RRAVK  D + AD+AITHY+ IE + +N +    
Sbjct: 200 AVVWGRPRTLSGTIDAPLGRATGDRTRRAVKRPDSQDADAAITHYEVIERFQENPDATAL 259

Query: 245 VSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQAL 304
            SL++CHLETGRTHQIRVHMAH G+PL+GD +YG GF+TKAN++    +  +    RQAL
Sbjct: 260 ASLVECHLETGRTHQIRVHMAHIGHPLVGDTVYGAGFRTKANLLPEEIRKVVNGFGRQAL 319

Query: 305 HAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLN 338
           HA  L F HPR  + M F+VP+P+DM+ ++  L 
Sbjct: 320 HAFMLQFEHPRTGELMHFEVPLPDDMVKLVAALR 353