PSIBLAST alignment of GI: 254780610 and protein with PDB id: 1qyu
>gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud Length = 349
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 114/321 (35%), Positives = 159/321 (49%), Gaps = 20/321 (6%)
Query: 15 LLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74
+S++ R+D+ LA + +SRS +K IL+ + +NG V P KV+ G+ I
Sbjct: 33 TVSENQLGQRLDQALAEXFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 91
Query: 75 VPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLS 134
++ ++IPLDI+YED+DII+INKP LVVHP GN GT++NA +
Sbjct: 92 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA----LLHYYP 147
Query: 135 SINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPL 194
I V R GIVHRLDKDTTG+ VVAK A +L E + +
Sbjct: 148 PIADVPRAGIVHRLDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGT 207
Query: 195 PDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLET 254
D I P R A+THY+ E + + + L+ LET
Sbjct: 208 VDEPISRHPTKRTHXAVHPM---------GKPAVTHYRIXEHFRVH-----TRLRLRLET 253
Query: 255 GRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHP 314
GRTHQIRVH AH +PL+GDP+YG G + S + RQALHA L HP
Sbjct: 254 GRTHQIRVHXAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATXLRLYHP 312
Query: 315 RNNQDMDFQVPIPEDMLTVIR 335
+ + ++ PIP+D + +I
Sbjct: 313 ISGIEXEWHAPIPQDXVELIE 333