PSIBLAST alignment of GI: 254780610 and protein with PDB id: 1qyu

>gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud Length = 349
 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 114/321 (35%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 15  LLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74
            +S++    R+D+ LA    + +SRS +K  IL+  + +NG V   P  KV+ G+   I 
Sbjct: 33  TVSENQLGQRLDQALAEXFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 91

Query: 75  VPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLS 134
               ++     ++IPLDI+YED+DII+INKP  LVVHP  GN  GT++NA      +   
Sbjct: 92  AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA----LLHYYP 147

Query: 135 SINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPL 194
            I  V R GIVHRLDKDTTG+ VVAK   A  +L E       +   +            
Sbjct: 148 PIADVPRAGIVHRLDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGT 207

Query: 195 PDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLET 254
            D  I   P  R                    A+THY+  E +  +     + L+  LET
Sbjct: 208 VDEPISRHPTKRTHXAVHPM---------GKPAVTHYRIXEHFRVH-----TRLRLRLET 253

Query: 255 GRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHP 314
           GRTHQIRVH AH  +PL+GDP+YG G        +    S +    RQALHA  L   HP
Sbjct: 254 GRTHQIRVHXAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATXLRLYHP 312

Query: 315 RNNQDMDFQVPIPEDMLTVIR 335
            +  + ++  PIP+D + +I 
Sbjct: 313 ISGIEXEWHAPIPQDXVELIE 333