RPSBLAST alignment for GI: 254780610 and conserved domain: PRK11180
>gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional. Length = 325
Score = 255 bits (654), Expect = 1e-68
Identities = 128/326 (39%), Positives = 179/326 (54%), Gaps = 26/326 (7%)
Query: 17 SDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76
S+S R+D+ LA L +SRS +K IL+ + +NG V P KV+ G+ I
Sbjct: 12 SESQLGQRLDQALA-ELFPDYSRSRIKEWILDQRVLVNGKVINKPKEKVLGGEQVAIDAE 70
Query: 77 AAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSI 136
++ ++IPLDI+YEDDDI+VINKP LVVHP GN GT++NALL++ I
Sbjct: 71 IEEEARFEPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY----PPI 126
Query: 137 NGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPD 196
V R GIVHRLDKDTTG+MVVAK A +L V+ + + R Y A+ G +
Sbjct: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRL----VEALQKREITREYEAVAIGH-MTA 181
Query: 197 SGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGR 256
G ++ P+ R + R AV A+THY+ +E + + L+ LETGR
Sbjct: 182 GGTVDEPISRHPTKRTHMAVH----PMGKPAVTHYRIMEHFR-----VHTRLRLRLETGR 232
Query: 257 THQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSL---ARQALHAHSLSFSH 313
THQIRVHMAH +PL+GD +YG + ++ I +L RQALHA L H
Sbjct: 233 THQIRVHMAHITHPLVGDQVYGG----RPRPPKGASEEFISTLRKFDRQALHATMLRLYH 288
Query: 314 PRNNQDMDFQVPIPEDMLTVIRKLNE 339
P +M++ P+P+DM+ +I L
Sbjct: 289 PITGIEMEWHAPLPQDMVELIEALRA 314