RPSBLAST alignment for GI: 254780610 and conserved domain: COG0564
>gnl|CDD|30910 COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]. Length = 289
Score = 296 bits (760), Expect = 5e-81
Identities = 143/313 (45%), Positives = 199/313 (63%), Gaps = 31/313 (9%)
Query: 17 SDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76
+ A R+D++LA L SRS ++ LI G + +NG K P+ K+ PGD I +P
Sbjct: 7 PEEEAGQRLDKFLAKLLP--ISRSRIQKLIRKGRVRVNGKKVK-PSYKLKPGDVVRIPLP 63
Query: 77 -AAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSS 135
++ + E+IPLDILYED+D++V+NKPAGLVVHP G+ GTLVNALL HC +
Sbjct: 64 EEPEEEKLVPEDIPLDILYEDEDLLVVNKPAGLVVHPGGGHHEGTLVNALLRHCQDG--- 120
Query: 136 INGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLP 195
V+RPGIVHRLDKDT+G+++VAKN A ++LSEQF ++K+ Y A+V G
Sbjct: 121 ---VERPGIVHRLDKDTSGLLLVAKNREAARELSEQFKQR----KVKKTYLALVRGHLPE 173
Query: 196 DSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETG 255
D G I+AP+GR NR + AV + + + AITHY+ +E + N +L++ ETG
Sbjct: 174 DEGTIDAPIGRDPKNRKKMAV--VKEGSGKPAITHYEVLERFGDN----YTLVELKPETG 227
Query: 256 RTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPR 315
RTHQIRVH+AH G+P++GDPLYG KSA L RQALHA+ LSF+HP
Sbjct: 228 RTHQIRVHLAHLGHPIVGDPLYG-----------GKDKSAGAGLKRQALHAYKLSFTHPL 276
Query: 316 NNQDMDFQVPIPE 328
++++F+ P+PE
Sbjct: 277 TGEELEFEAPLPE 289