RPSBLAST alignment of GI: 254780610 and protein with PDBid: 1ksk

>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Length = 234

 Score = 90.6 bits (224), Expect = 5e-19
 Identities = 39/249 (15%), Positives = 87/249 (34%), Gaps = 52/249 (20%)

Query: 24  RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNI 83
           R+D+++A  L    SR+     I    ++++G + +N   K++P               +
Sbjct: 5   RLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD------------V 50

Query: 84  AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPG 143
           A +  PL          ++NKP G V      +                        +  
Sbjct: 51  AYDGNPL-AQQHGPRYFMLNKPQGYVCSTDDPDH----------PTVLYFLDEPVAWKLH 99

Query: 144 IVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAP 203
              RLD DTTG++++  +     +++            ++ Y   +             P
Sbjct: 100 AAGRLDIDTTGLVLMTDDGQWSHRITSPRHHC------EKTYLVTLES-----------P 142

Query: 204 LGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVH 263
           +    + +  + V+  ++K     +T    +E+         + ++  +  GR HQ++  
Sbjct: 143 VADDTAEQFAKGVQLHNEKD----LTKPAVLEVITP------TQVRLTISEGRYHQVKRM 192

Query: 264 MAHKGNPLI 272
            A  GN ++
Sbjct: 193 FAAVGNHVV 201