RPSBLAST alignment of GI: 254780610 and protein with PDBid: 1vio

>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Length = 243

 Score = 56.9 bits (136), Expect = 6e-09
 Identities = 35/250 (14%), Positives = 75/250 (30%), Gaps = 52/250 (20%)

Query: 24  RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNI 83
           R+D+++A ++    +RS     I    + ING + K+ + ++   D              
Sbjct: 4   RLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQED-------------- 47

Query: 84  AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPG 143
                  +I +ED+ +  I +    +++   G           Y             +  
Sbjct: 48  -------EIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGD--YPTIYQFFDYPLAGKLH 98

Query: 144 IVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAP 203
              RLD DTTG++++  +     +                   +            +  P
Sbjct: 99  SAGRLDVDTTGLVLLTDDGQWSHR-----------------ITSPKHHCEKTYLVTLADP 141

Query: 204 LGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVH 263
           +    S      +    +K            +            +   +  GR HQ++  
Sbjct: 142 VEENYSAACAEGILLRGEKEPTKPAKLEILDD----------YNVNLTISEGRYHQVKRM 191

Query: 264 MAHKGNPLIG 273
            A  GN ++G
Sbjct: 192 FAALGNKVVG 201