RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase
protein, ribosomal large subunit D [Candidatus Liberibacter asiaticus
str. psy62]
(340 letters)
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase D, RluD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 183 bits (464), Expect = 2e-47
Identities = 104/253 (41%), Positives = 141/253 (55%), Gaps = 19/253 (7%)
Query: 86 ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIV 145
++IPLDI+YED+DII+INKP LVVHP GN GT++NALL++ I V R GIV
Sbjct: 4 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPRAGIV 59
Query: 146 HRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLG 205
HRLDKDTTG+MVVAK A +L E Y V + G ++ P+
Sbjct: 60 HRLDKDTTGLMVVAKTVPAQTRLVESLQRRE-----ITREYEAVAIGHMTAGGTVDEPIS 114
Query: 206 RCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMA 265
R + R AV A+THY+ +E + + + L+ LETGRTHQIRVHMA
Sbjct: 115 RHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-----TRLRLRLETGRTHQIRVHMA 165
Query: 266 HKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVP 325
H +PL+GDP+YG + + S + RQALHA L HP + +M++ P
Sbjct: 166 HITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 224
Query: 326 IPEDMLTVIRKLN 338
IP+DM+ +I +
Sbjct: 225 IPQDMVELIEVMR 237
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase C, RluC {Escherichia coli [TaxId: 562]}
Length = 227
Score = 163 bits (414), Expect = 1e-41
Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 25/246 (10%)
Query: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKD 151
I+YEDD I+V+NKP+G VH G G + + +VHRLD+D
Sbjct: 3 IMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA--------RFLELVHRLDRD 54
Query: 152 TTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNR 211
T+GV++VAK A + L EQ + G Y A+V G + APL +
Sbjct: 55 TSGVLLVAKKRSALRSLHEQLREKGMQKD----YLALVRGQWQSHVKSVQAPLLKNILQS 110
Query: 212 LRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPL 271
R V+ + + T ++ E Y +L++C TGRTHQIRVH + G+P+
Sbjct: 111 GERIVR--VSQEGKPSETRFKVEERYAFA-----TLVRCSPVTGRTHQIRVHTQYAGHPI 163
Query: 272 IGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDML 331
D YG + A L R LHA +L F+HP + M + P+ E +
Sbjct: 164 AFDDRYGDREFDR------QLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 217
Query: 332 TVIRKL 337
++K+
Sbjct: 218 RCLQKM 223
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 43.5 bits (103), Expect = 3e-05
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 24 RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD 69
R+D+++A ++ +RS I + ING + K+ + ++ D
Sbjct: 3 RLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQED 46
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 59
Score = 40.9 bits (96), Expect = 2e-04
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 24 RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD 69
R+D+++A L SR+ I ++++G + +N K++P
Sbjct: 2 RLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH 45
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 39.9 bits (92), Expect = 3e-04
Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 37/178 (20%)
Query: 95 EDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTG 154
E+ ++NKP G V G++ T+ Y L RLD DTTG
Sbjct: 1 EEGQYFMLNKPQGCVCSNDDGDYP-TIYQFFDYPLAGKLH---------SAGRLDVDTTG 50
Query: 155 VMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRR 214
++++ + + + + P+ S
Sbjct: 51 LVLLTDD-----------------GQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAE 93
Query: 215 AVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLI 272
+ +K + + + GR HQ++ A GN ++
Sbjct: 94 GILLRGEKEPTKPAKLEILDDYN----------VNLTISEGRYHQVKRMFAALGNKVV 141
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Escherichia coli [TaxId: 562]}
Length = 172
Score = 34.0 bits (77), Expect = 0.019
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 37/173 (21%)
Query: 100 IVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVA 159
++NKP G V + T++ L L RLD DTTG++++
Sbjct: 4 FMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLH---------AAGRLDIDTTGLVLMT 53
Query: 160 KNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGI 219
+ +++ + +P+ + + + V+
Sbjct: 54 DDGQWSHRITS-----------------PRHHCEKTYLVTLESPVADDTAEQFAKGVQLH 96
Query: 220 DDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLI 272
++K ++ + GR HQ++ A GN ++
Sbjct: 97 NEKDLTKPAVLEVITPTQ----------VRLTISEGRYHQVKRMFAAVGNHVV 139
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 33.2 bits (75), Expect = 0.030
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 16/64 (25%)
Query: 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158
+++++KP G+ + + I R G LD TG++ +
Sbjct: 6 VLLLDKPQGMSSN----------------DALQKVKRIYNANRAGHTGALDPLATGMLPI 49
Query: 159 AKND 162
+
Sbjct: 50 CLGE 53
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 245
Score = 33.2 bits (75), Expect = 0.036
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158
+I ++KP G H + I +++ G LD +GV+ V
Sbjct: 44 VINLDKPPGPTSH----------------EVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 87
Query: 159 AKNDLAHQKLSEQFVDHGKSTR 180
A ++ + + GK
Sbjct: 88 ALEK--ATRVVQALLPAGKEYV 107
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 32.1 bits (72), Expect = 0.068
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158
I+VI+KPAG+ H I +R G LD TGV+V+
Sbjct: 6 IVVIDKPAGMTSH----------------DVVGRCRRIFATRRVGHAGTLDPMATGVLVI 49
Query: 159 AKNDLAHQKLSEQFVDH 175
A + L
Sbjct: 50 GIER-ATKILGLLTAAP 65
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 30.9 bits (69), Expect = 0.17
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 16/61 (26%)
Query: 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158
I+V KP G H + + ++ G LD GV+++
Sbjct: 5 ILVAYKPKGPTSH----------------DVVDEVRKKLKTRKVGHGGTLDPFACGVLII 48
Query: 159 A 159
Sbjct: 49 G 49
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 29.8 bits (66), Expect = 0.31
Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 16/107 (14%)
Query: 48 NGFISINGMVSKN-PNRKVVPGDSFLITVPAAQKLN----IAQENIPLDILYEDDDIIVI 102
N S+NG + P + D + L D I +
Sbjct: 46 NRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINL 105
Query: 103 NKPAGLVV---HPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVH 146
PG W + C N G++ V
Sbjct: 106 FPATLFDAYMVAQNPGEW--------MLSCQNLNHLKAGLQAFFQVQ 144
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 230
Score = 28.1 bits (62), Expect = 1.0
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 16/61 (26%)
Query: 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158
++V++KP G H + I + + G LD TGV+ V
Sbjct: 31 VVVVDKPRGPTSH----------------EVSTWVKKILNLDKAGHGGTLDPKVTGVLPV 74
Query: 159 A 159
A
Sbjct: 75 A 75
>d1n67a1 b.2.3.4 (A:229-369) Clumping factor A {Staphylococcus
aureus [TaxId: 1280]}
Length = 141
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 62 NRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDII 100
V GD+F ITVP LN + + D ++
Sbjct: 38 PNSAVKGDTFKITVPKELNLNGVTSTAKVPPIMAGDQVL 76
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A
{Staphylococcus aureus [TaxId: 1280]}
Length = 242
Score = 27.7 bits (60), Expect = 1.5
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 272 IGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDML 331
I +G + V N+ S I + + + HS SH +++ V I +
Sbjct: 175 IELTTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVK 234
Query: 332 TVIRKLNE 339
+I + NE
Sbjct: 235 RIINEKNE 242
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.7 bits (61), Expect = 1.6
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 15/98 (15%)
Query: 44 ILILNG-----FISINGMVSKNPNRKVVPGDSFLITVP-------AAQKLNIAQENIPLD 91
I+ G + + P + P + + +
Sbjct: 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGN 185
Query: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHC 129
+ + V N + + +P N G L +A++ C
Sbjct: 186 ---AANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGC 220
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 188
Score = 27.7 bits (60), Expect = 1.6
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 87 NIPLDILYEDDDIIVINKPAGLVVHPAP 114
++P + + + NK + PAP
Sbjct: 161 DLPAKLFGQTISVEEANKLLFKPIDPAP 188
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 24 RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD 69
+ L S + KI I G + ++G V K+V G
Sbjct: 22 ELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ 66
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
meningitidis [TaxId: 487]}
Length = 282
Score = 27.2 bits (59), Expect = 1.8
Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 20/233 (8%)
Query: 13 ISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFL 72
+ + + I + + + +R+ V + G +I + + P +
Sbjct: 19 AKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRH 78
Query: 73 ITVPAAQKLNIAQENIPLD-ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHN 131
I++ +L + + D +LY D D++V + L NW G ++ +
Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEG 138
Query: 132 NLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVW- 190
I + GV+++ + + + + + Y
Sbjct: 139 YKQKIG-MADGEYYFN-----AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDIL 192
Query: 191 -------GIPLPDS-----GIINAPLGRCKSNRLRRAVKGIDDKTADSAITHY 231
S + + A++HY
Sbjct: 193 NGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHY 245
>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and
C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Length = 103
Score = 27.1 bits (60), Expect = 2.3
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 97 DDIIVINKPAGLVVHPAPGNWT 118
D+ ++ + P+PG W
Sbjct: 52 SDVWLLPVQRSMD-APSPGEWK 72
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 358
Score = 27.0 bits (59), Expect = 2.3
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 271 LIGDPLYGKGFKTKANIVNNN 291
++G + + + K V +
Sbjct: 306 VVGTAMDARSVQAKGKYVLDK 326
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 324
Score = 26.6 bits (57), Expect = 2.8
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 62 NRKVVPGDSFLITVPAAQKLNIAQENIP-LDILYEDDDII-VINKPAGLVVHPAPGNW 117
+ + G + L ++N+ ++ + ++ ++ LV H P +
Sbjct: 266 HHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWNLVAHECPNYF 323
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 26.1 bits (57), Expect = 4.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 230 HYQTIEIYNKNSNFAVSLLK----CHLETGRT 257
HY + + K +F ++ L+ CH RT
Sbjct: 1 HYYAVAVVKKGGSFQLNELQGLKSCHTGLRRT 32
>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40,
RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 26.2 bits (57), Expect = 4.3
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 62 NRKVVPGDSFLITVPAAQKLNIAQENIPLDI---------------LYEDDDIIVINKPA 106
+ V+PG+ L+ + PL + L D +++ K
Sbjct: 9 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTK-C 67
Query: 107 GLVVHPAPGNWTGTLV 122
G + H PG+ +G V
Sbjct: 68 GRLRHKEPGSGSGGGV 83
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 26.0 bits (56), Expect = 4.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 82 NIAQENIPLDILYEDDDIIVIN 103
I +IP +YED+ ++
Sbjct: 7 KIIAGDIPSAKVYEDEHVLAFL 28
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 25.9 bits (57), Expect = 4.8
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 38 SRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75
S + + LI N + ++G V +P +V ++
Sbjct: 32 SNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQR 69
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 25.9 bits (56), Expect = 4.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 82 NIAQENIPLDILYEDDDIIVIN 103
I + +P I YED+ +I I
Sbjct: 8 KIIKRELPSTIYYEDERVIAIK 29
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 25.4 bits (55), Expect = 6.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 82 NIAQENIPLDILYEDDDIIVIN 103
I ++ IP I++EDD + +
Sbjct: 6 KIIRKEIPAKIIFEDDRCLAFH 27
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 25.1 bits (54), Expect = 9.4
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 51 ISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVV 110
+ ING + PN GD+ +TV L +I +++ D +
Sbjct: 58 MLINGNIM-GPNIVANWGDTVEVTV--INNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 111 HPAPGNWTGTLVNA------LLYHCHNNLSSINGVKRPGIVH 146
P T YH H + NGV ++
Sbjct: 115 PIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,249,501
Number of extensions: 56978
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 39
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)