BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase
protein, ribosomal large subunit D [Candidatus Liberibacter asiaticus
str. psy62]
(340 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN 60
MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN
Sbjct: 1 MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN 60
Query: 61 PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT 120
PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT
Sbjct: 61 PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT 120
Query: 121 LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180
LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR
Sbjct: 121 LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180
Query: 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKN 240
LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKN
Sbjct: 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKN 240
Query: 241 SNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLA 300
SNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLA
Sbjct: 241 SNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLA 300
Query: 301 RQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLNEK 340
RQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLNEK
Sbjct: 301 RQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLNEK 340
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 113 bits (283), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 30/252 (11%)
Query: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVK--RPGIVHRLD 149
+LYED I V NKPAG+ V G + YH L S K +P + HRLD
Sbjct: 101 LLYEDSKIYVFNKPAGISVQGGSG---------IAYHIDGFLKSWVDSKGQKPRLTHRLD 151
Query: 150 KDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPL-PDSGIINAPLGRCK 208
++T+G++VVA+ A Q L+E F + R+++ Y+++VWGIP I N L +
Sbjct: 152 QETSGILVVARTRAAAQHLTESF----RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSH 207
Query: 209 SNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKG 268
V ++K A+ AI+H++ I+ + + L+ TGRTHQ+RVH H G
Sbjct: 208 IGGDYVHVVKQNEKGANYAISHFKVIDCFAQK----FCWLEMQPHTGRTHQLRVHALHMG 263
Query: 269 NPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPE 328
P++GD Y FK N S I + + LHA + HP + + P+P
Sbjct: 264 CPIVGDHKYCANFK-------GNFTSPIQN--KLYLHARYMDLPHPEGGR-LQITAPLPA 313
Query: 329 DMLTVIRKLNEK 340
M+ L K
Sbjct: 314 HMVKTWDSLGFK 325
>gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 238
Score = 23.9 bits (50), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 123 NALLYHCHNNLSSINGVKRPG-IVHRLDKDTT--GVMVVAKNDLAHQKLSEQFVD-HGKS 178
++LL+ CH+++S I G+ + + LD++ + + KN + +K + D H
Sbjct: 12 SSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAAL 71
Query: 179 TRLKRAYYA---MVWGIPLPDSGIINAPLGRCKSNRLRRAVKG 218
+ RA + I + D + + GR ++N L R + G
Sbjct: 72 FKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSG 114
>gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 318
Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 286 NIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLN 338
NI N ++A + Q + A S F H DF V I D T++ N
Sbjct: 45 NIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASAN 97
>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 405
Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLY 127
YE + I + N+ LVV PA N+ + + ++Y
Sbjct: 71 YESNHIQLANECDLLVVAPASANFIAHVAHGMVY 104
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,770
Number of Sequences: 1233
Number of extensions: 9206
Number of successful extensions: 23
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 340
length of database: 328,796
effective HSP length: 75
effective length of query: 265
effective length of database: 236,321
effective search space: 62625065
effective search space used: 62625065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)