HHsearch alignment for GI: 254780611 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=96.33  E-value=0.034  Score=34.16  Aligned_cols=57  Identities=19%  Similarity=0.370  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r  224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES  283 (302)
Q Consensus       224 ~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~  283 (302)
T Consensus       132 ~~~~~~~~l~tLT~RERqVl~~vV---~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a~  188 (202)
T COG4566         132 RQAAIRARLATLTPRERQVLDLVV---RGLMNKQIAFDLGISERTVELHRANVMEKMQAR  188 (202)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHH---CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             899999999866988999999998---376308999983986645999999999997333