HHsearch alignment for GI: 254780611 and conserved domain: PRK05803

>PRK05803 sporulation sigma factor SigK; Reviewed.
Probab=100.00  E-value=0  Score=417.95  Aligned_cols=211  Identities=26%  Similarity=0.385  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             05999999840799999899999999999828599999999943077875655557999988899999988899898621
Q gi|254780611|r   14 IGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKF   93 (302)
Q Consensus        14 ~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kF   93 (302)
T Consensus        15 ~~l~syl~~i~~~~~Ls~eEE~~La~~~~~-GD~~Ar~~LI~~NLRLVvsIAkky~~~g~~l~DLIQEGniGLi~AvekF   93 (228)
T PRK05803         15 LFLVSYVKNNSFPQPLSEEEERKYLELMKQ-GDEEARNILIERNLRLVAHIVKKFENTGEDVDDLISIGTIGLIKAIDSF   93 (228)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999974788999999999999999984-6899999999987799999996277999898999999999999999984


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             85345689997577899999985320246001102300358999999997887866244788824677888618983211
Q gi|254780611|r   94 DPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEV  173 (302)
Q Consensus        94 Dp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v  173 (302)
T Consensus        94 Dp~rG~rFSTYA~~wIr~~I~~~lr~~kk-------------------~~~-----------------------------  125 (228)
T PRK05803         94 DAGKGTKLATYAARCIENEILMHLRNLKK-------------------TKG-----------------------------  125 (228)
T ss_pred             CCCCCCCCHHCCHHHHHHHHHHHHHHHHH-------------------HCC-----------------------------
T ss_conf             89989970520099999999999999887-------------------535-----------------------------


Q ss_pred             CCCCCCCCCCCCHHHHCCCC-CCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--C
Q ss_conf             00000012234335520232-34532000001235687056556666666777999999621999999999998278--8
Q gi|254780611|r  174 ISMNCRLAGDESLNALINSS-DKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQ--E  250 (302)
Q Consensus       174 ~~l~~~~~~~~SLd~~i~~~-d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~--~  250 (302)
T Consensus       126 ---------~~sl~~~i~~d~e~~e~~l~d~l~~~~~~~~e~~----~~~~~~~~l~~~l~~L~~REr~II~~RfGL~~~  192 (228)
T PRK05803        126 ---------EVSLQDPIGVDKEGNEISLIDILKSESDDVIEMV----ELSMEVEKLYKKIDILDPREKEVIEMRYGLGDG  192 (228)
T ss_pred             ---------CCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf             ---------5012374466878983224343168899879999----999989999999851898899999998647899


Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             888989999997789999999999999999999997
Q gi|254780611|r  251 NPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK  286 (302)
Q Consensus       251 ~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~  286 (302)
T Consensus       193 ~~~Tl~eIg~~lgiSrERVRQIe~~Al~KLrk~L~r  228 (228)
T PRK05803        193 KEKTQREIAKALGISRSYVSRIEKKALKKLFKELVR  228 (228)
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             971599999998979999999999999999998559