HHsearch alignment for GI: 254780611 and conserved domain: PRK05803
>PRK05803 sporulation sigma factor SigK; Reviewed.
Probab=100.00 E-value=0 Score=417.95 Aligned_cols=211 Identities=26% Similarity=0.385 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 05999999840799999899999999999828599999999943077875655557999988899999988899898621
Q gi|254780611|r 14 IGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKF 93 (302)
Q Consensus 14 ~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kF 93 (302)
T Consensus 15 ~~l~syl~~i~~~~~Ls~eEE~~La~~~~~-GD~~Ar~~LI~~NLRLVvsIAkky~~~g~~l~DLIQEGniGLi~AvekF 93 (228)
T PRK05803 15 LFLVSYVKNNSFPQPLSEEEERKYLELMKQ-GDEEARNILIERNLRLVAHIVKKFENTGEDVDDLISIGTIGLIKAIDSF 93 (228)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999974788999999999999999984-6899999999987799999996277999898999999999999999984
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 85345689997577899999985320246001102300358999999997887866244788824677888618983211
Q gi|254780611|r 94 DPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEV 173 (302)
Q Consensus 94 Dp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v 173 (302)
T Consensus 94 Dp~rG~rFSTYA~~wIr~~I~~~lr~~kk-------------------~~~----------------------------- 125 (228)
T PRK05803 94 DAGKGTKLATYAARCIENEILMHLRNLKK-------------------TKG----------------------------- 125 (228)
T ss_pred CCCCCCCCHHCCHHHHHHHHHHHHHHHHH-------------------HCC-----------------------------
T ss_conf 89989970520099999999999999887-------------------535-----------------------------
Q ss_pred CCCCCCCCCCCCHHHHCCCC-CCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--C
Q ss_conf 00000012234335520232-34532000001235687056556666666777999999621999999999998278--8
Q gi|254780611|r 174 ISMNCRLAGDESLNALINSS-DKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQ--E 250 (302)
Q Consensus 174 ~~l~~~~~~~~SLd~~i~~~-d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~--~ 250 (302)
T Consensus 126 ---------~~sl~~~i~~d~e~~e~~l~d~l~~~~~~~~e~~----~~~~~~~~l~~~l~~L~~REr~II~~RfGL~~~ 192 (228)
T PRK05803 126 ---------EVSLQDPIGVDKEGNEISLIDILKSESDDVIEMV----ELSMEVEKLYKKIDILDPREKEVIEMRYGLGDG 192 (228)
T ss_pred ---------CCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf ---------5012374466878983224343168899879999----999989999999851898899999998647899
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888989999997789999999999999999999997
Q gi|254780611|r 251 NPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 251 ~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 193 ~~~Tl~eIg~~lgiSrERVRQIe~~Al~KLrk~L~r 228 (228)
T PRK05803 193 KEKTQREIAKALGISRSYVSRIEKKALKKLFKELVR 228 (228)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 971599999998979999999999999999998559