HHsearch alignment for GI: 254780611 and conserved domain: PRK05901

>PRK05901 RNA polymerase sigma factor; Provisional.
Probab=100.00  E-value=0  Score=508.18  Aligned_cols=267  Identities=25%  Similarity=0.424  Sum_probs=232.9

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             587405999999840799999899999999999828------------------59999999994307787565555799
Q gi|254780611|r   10 VNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHG------------------DLSAAHRLVTSHLRLVVKIAMGYRGY   71 (302)
Q Consensus        10 ~~~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~g------------------d~~Ar~~Li~~nlrlV~~iA~~y~~~   71 (302)
T Consensus       104 ~~tdd~v~~yl~~~g~~~ll~~~~e~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ar~~Li~aNLRLVvsIAkkY~~~  182 (398)
T PRK05901        104 TATADPVKAYLKQIGKVKLLNAEEEVELAKRIEA-GLYAEELLEKRDLRWIARDGKRAKNHLLEANLRLVVSLAKRYTNR  182 (398)
T ss_pred             CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8889719999986275548887999999999984-045676676777777530539999999997069999999764689


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99888999999888998986218534568999757789999998532024600110230035899999999788786624
Q gi|254780611|r   72 GLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITD  151 (302)
Q Consensus        72 g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~  151 (302)
T Consensus       183 Gl~l~DLIQEGniGLirAvekFDp~rG~rFSTYA~wWIRqaI~rai~~~~r~IRiP~h~~e--~---~~k~~r~~~~l~~  257 (398)
T PRK05901        183 GLSFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE--T---INKLGRIERELLQ  257 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEECCHHHHH--H---HHHHHHHHHHHHH
T ss_conf             9898899998689999999971977799542114999999999999966873523323999--9---9999999999999


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             47888246778886189832110000001223433552023234532000001235687056556666666777999999
Q gi|254780611|r  152 NNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRS  231 (302)
Q Consensus       152 ~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~  231 (302)
T Consensus       258 ~~gr~Pt~eEiA~~lg~~~~~v~~~~~~~~~~~SLd~~vg~--d~~~~l~d~i~D~~~~~p~~---~~~~~~l~~~l~~~  332 (398)
T PRK05901        258 ELGREPTPEELAEEMDFTPEKVREIQKYAREPISLDKTIGD--EGDSQFGDFIEDSEAVSPVD---AVSFTLLQDQLQEV  332 (398)
T ss_pred             HHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHCCCCCCCCHHH---HHHHHHHHHHHHHH
T ss_conf             84899999999988199999999999972898556787789--98651866416999999999---99999999999999


Q ss_pred             HHCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             621999999999998278--88889899999977899999999999999999999974
Q gi|254780611|r  232 MSVLNPRERRIFEARRLQ--ENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ  287 (302)
Q Consensus       232 l~~L~~rEr~II~~ry~~--~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~  287 (302)
T Consensus       333 L~~L~~REr~Ii~~RyGL~~~~~~TL~eIg~~lgvSrERVRQIE~kAL~KLR~~~~~~  390 (398)
T PRK05901        333 LETLSEREAGVIRMRFGLTDGQPKTLDEIGQVYGVTRERIRQIESKTMRKLRHPSRSQ  390 (398)
T ss_pred             HCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             8389999999999975899989603999998979699999999999999967837887