HHsearch alignment for GI: 254780611 and conserved domain: PRK06704

>PRK06704 RNA polymerase factor sigma-70; Validated.
Probab=96.59  E-value=0.067  Score=32.23  Aligned_cols=61  Identities=15%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             779999996219999999999982788888989999997789999999999999999999997
Q gi|254780611|r  224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK  286 (302)
Q Consensus       224 ~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~  286 (302)
T Consensus       106 ~~em~~~l~~~L~p~Q~vIfLLkDVF~--ys~~eiAe~~s~sEGaVKasLfRsR~RLK~~~ee  166 (228)
T PRK06704        106 LHEMVGKVLSSLNVQQSAILLLKDVFQ--YSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEE  166 (228)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf             999999998325888899999999987--5599999995566349999999999998733853