HHsearch alignment for GI: 254780611 and conserved domain: PRK06704
>PRK06704 RNA polymerase factor sigma-70; Validated.
Probab=96.59 E-value=0.067 Score=32.23 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 779999996219999999999982788888989999997789999999999999999999997
Q gi|254780611|r 224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 224 ~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 106 ~~em~~~l~~~L~p~Q~vIfLLkDVF~--ys~~eiAe~~s~sEGaVKasLfRsR~RLK~~~ee 166 (228)
T PRK06704 106 LHEMVGKVLSSLNVQQSAILLLKDVFQ--YSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEE 166 (228)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999998325888899999999987--5599999995566349999999999998733853