HHsearch alignment for GI: 254780611 and conserved domain: PRK06811

>PRK06811 RNA polymerase factor sigma-70; Validated.
Probab=99.76  E-value=3.7e-16  Score=127.52  Aligned_cols=174  Identities=18%  Similarity=0.253  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             999999999828599999999943077875655557999---98889999998889989862185345689997577899
Q gi|254780611|r   34 EYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYG---LPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIK  110 (302)
Q Consensus        34 e~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g---~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr  110 (302)
T Consensus         3 d~~Li~~~~-~GD~~Af~~l~~~y~~~v~~~~~~~l~~~~~~~~aeD~vQevFi~~~~~~~~~~~~~~-~f~~WL~~Ia~   80 (185)
T PRK06811          3 EDNFIKELK-KKNEKALEFIIDTYGNLIKKIVHKVLGTDQYKQLIEECVNDIFLSIWNNIDKFDEEKG-SFKNWIAAISK   80 (185)
T ss_pred             HHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCC-CHHHHHHHHHH
T ss_conf             999999998-2789999999999999999999999677688989999999999999983700388645-29999999999


Q ss_pred             HHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf             99998532024600110230035899999999788786624478882467788861898321100000012234335520
Q gi|254780611|r  111 AAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALI  190 (302)
Q Consensus       111 ~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i  190 (302)
T Consensus        81 n~~~d~~Rk~~r----------------------~~~------------------------------------~~~~~~~  102 (185)
T PRK06811         81 YKAIDYKRKLTK----------------------NNN------------------------------------IDSDEFI  102 (185)
T ss_pred             HHHHHHHHHHCC----------------------CCC------------------------------------CCHHHHC
T ss_conf             999999997426----------------------566------------------------------------6456521


Q ss_pred             CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             23234532000001235687056556666666777999999621999999999998278888898999999778999999
Q gi|254780611|r  191 NSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVR  270 (302)
Q Consensus       191 ~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVr  270 (302)
T Consensus       103 --------------~~~~~~~e~~~~----~~e~~~~l~~~l~~L~~~~r~v~~l~~~~~--~s~~EIA~~l~is~~tVk  162 (185)
T PRK06811        103 --------------LISEESIENEII----LKENKEEIIKLINDLKKLDREIFIKRYLLG--ESIEEIAKKLGLTRSAID  162 (185)
T ss_pred             --------------CCCCCCHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHH
T ss_conf             --------------355588788999----999999999998489999999999999949--999999999892999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999974
Q gi|254780611|r  271 QIEARAFKKVQESIQKQ  287 (302)
Q Consensus       271 QI~~~AL~kLR~~l~~~  287 (302)
T Consensus       163 ~rl~Rar~~Lr~~L~~~  179 (185)
T PRK06811        163 NRLSRGRKKLKNKLNIL  179 (185)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999998898