HHsearch alignment for GI: 254780611 and conserved domain: PRK06930
>PRK06930 positive control sigma-like factor; Validated.
Probab=98.46 E-value=9.7e-07 Score=64.56 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 799999962199999999999827888889899999977899999999999999999999974012
Q gi|254780611|r 225 RNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVEL 290 (302)
Q Consensus 225 ~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~~ 290 (302)
T Consensus 105 ~~~iedALs~Lt~rErevfll~~~~g--lsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~~~~~~Lf~ 168 (170)
T PRK06930 105 KIRIEDALSVLTEREKEVYLMHRGYG--LSYSEIAAYLNIKKSTVQSMIERAEKKIAKQINESLFC 168 (170)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98899999856988889998897618--88999999979889999999999999999985405312