HHsearch alignment for GI: 254780611 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.
Probab=98.46  E-value=9.7e-07  Score=64.56  Aligned_cols=64  Identities=19%  Similarity=0.342  Sum_probs=57.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             799999962199999999999827888889899999977899999999999999999999974012
Q gi|254780611|r  225 RNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVEL  290 (302)
Q Consensus       225 ~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~~  290 (302)
T Consensus       105 ~~~iedALs~Lt~rErevfll~~~~g--lsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~~~~~~Lf~  168 (170)
T PRK06930        105 KIRIEDALSVLTEREKEVYLMHRGYG--LSYSEIAAYLNIKKSTVQSMIERAEKKIAKQINESLFC  168 (170)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             98899999856988889998897618--88999999979889999999999999999985405312