HHsearch alignment for GI: 254780611 and conserved domain: PRK07408
>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=100.00 E-value=0 Score=454.33 Aligned_cols=247 Identities=21% Similarity=0.294 Sum_probs=214.6
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99989999999999982859999999994307787565555799-99888999999888998986218534568999757
Q gi|254780611|r 28 MLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGY-GLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSM 106 (302)
Q Consensus 28 ~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~-g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~ 106 (302)
T Consensus 5 ~~~keee~eL~~~y~~~gd~~ar~~LI~~nlrLV~~iA~ry~~~~~~~~~DLiQeG~iGLi~AvekFDp~kG~rFsTYA~ 84 (256)
T PRK07408 5 ESLKSETMELLRAYQQTPSIALRNQLVELNLGLVRKEAHRWSNQCSEPYEDLEQVGYLGLIRAIERFDPSKGHAFSSFAV 84 (256)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 11579999999999884999999999998099999999986157999878999999999999999739733898899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--CCCC
Q ss_conf 78999999853202460011023003589999999978878662447888246778886189832110000001--2234
Q gi|254780611|r 107 WWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL--AGDE 184 (302)
Q Consensus 107 ~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~--~~~~ 184 (302)
T Consensus 85 ~wIr~~I~~~lr~~~~~iRiP~~~-----~~~~~ki~~~~~~l~~~~gr~pt~~EiA~~l~is~~~v~~~~~~~~~~~~~ 159 (256)
T PRK07408 85 PYIRGEIQHYLRDKSPTVRIPRRW-----LELQRQAKKVRQELRQELGRQPTDQEIAQALDISLEEWQEIKLALQNRMPL 159 (256)
T ss_pred HHHHHHHHHHHHHHCCCEECCHHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCE
T ss_conf 999999999999808974136999-----999999999999999987899989999989596999999999987278873
Q ss_pred CHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 33552023234532000001235687056556666666777999999621999999999998278888898999999778
Q gi|254780611|r 185 SLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEV 264 (302)
Q Consensus 185 SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgi 264 (302)
T Consensus 160 SLd~~~~~~~d~~~~l~d~l~d~~~~~~~~~~------e~~~~L~~~l~~L~eREr~Il~~ry~~~--~tl~EIa~~lgv 231 (256)
T PRK07408 160 SLDAPVSQDEDGSTSLGDLLPDPRYRSFQLAQ------EDRIRLQQALAQLEERTREVLEFVFLHD--LTQKEAAERLGI 231 (256)
T ss_pred ECCCCCCCCCCCCCHHHHHCCCCCCCHHHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCHHHHHHHHCC
T ss_conf 05664779998761177755899975388999------9999999998569999999999996379--989999989798
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999974
Q gi|254780611|r 265 SRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 265 S~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 232 S~~rVsqi~~~AL~kLR~~L~~~ 254 (256)
T PRK07408 232 SPVTVSRRVKKGLQQLKKLLQPQ 254 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999972133