HHsearch alignment for GI: 254780611 and conserved domain: PRK08215
>PRK08215 sporulation sigma factor SigG; Reviewed.
Probab=100.00 E-value=0 Score=472.71 Aligned_cols=257 Identities=25% Similarity=0.362 Sum_probs=219.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 98665574558740599999984079999989999999999982859999999994307787565555799998889999
Q gi|254780611|r 1 MNRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVS 80 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQ 80 (302)
T Consensus 1 ~~~~~~~~~~~----------~~~k~PlLt~EEe~~L~~~~~-~gD~~Ar~~LI~~nLrLV~~iA~ky~~~g~~~~DLiQ 69 (257)
T PRK08215 1 MTRNKVEICGV----------NTSKLPVLKNEEMKELFRRMQ-NGDTSAREKLINGNLRLVLSVIQRFNNRGEYVDDLFQ 69 (257)
T ss_pred CCCCEEEEECC----------CCCCCCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 98650476266----------622489999999999999999-3889999999998789999999876589989889999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99888998986218534568999757789999998532024600110230035899999999788786624478882467
Q gi|254780611|r 81 EGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVV 160 (302)
Q Consensus 81 eG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~ 160 (302)
T Consensus 70 eG~iGLi~AiekFDp~rG~rFsTYA~~wIr~~I~~~i~~~-~~irip~~~~-----~~~~k~~~~~~~l~~~~~r~pt~~ 143 (257)
T PRK08215 70 VGCIGLMKAIDNFDLSQNVKFSTYAVPMIIGEIRRYLRDN-NPIRVSRSLR-----DIAYKALQVREKLIKENSKEPTVS 143 (257)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHC-CCCEEEHHHH-----HHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8799999999970976799543211999999999999967-9851009999-----999999999999999838999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 78886189832110000001223433552023234532000001235687056556666666777999999621999999
Q gi|254780611|r 161 AIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRER 240 (302)
Q Consensus 161 eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr 240 (302)
T Consensus 144 eiA~~l~i~~~~v~~~l~~~~~~~SL~~~~~~d~~d~~~~~d~~~d~~~~~~~~-~~-------~~~l~~~l~~L~~REr 215 (257)
T PRK08215 144 EIAKELEVPREEVVFALDAIQDPVSLFEPIYHDGGDPIFVMDQISDEKNKDEQW-LE-------EIALKEAMKRLNDREK 215 (257)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHH-HH-------HHHHHHHHHCCCHHHH
T ss_conf 999880989999999998638986676855578997104422147976550899-99-------9999999964999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999827888889899999977899999999999999999999
Q gi|254780611|r 241 RIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESI 284 (302)
Q Consensus 241 ~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l 284 (302)
T Consensus 216 ~Ii~~ry~~~--~Tl~eIa~~lGvSreRVrQie~~AL~kLR~~l 257 (257)
T PRK08215 216 MILNLRFFQG--KTQMEVADEIGISQAQVSRLEKAALKHMRKYI 257 (257)
T ss_pred HHHHHHHCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999994799--98999999989699999999999999998549