HHsearch alignment for GI: 254780611 and conserved domain: PRK08583
>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=100.00 E-value=0 Score=466.37 Aligned_cols=251 Identities=21% Similarity=0.277 Sum_probs=214.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99840799999899999999999828599999999943077875655557999988899999988899898621853456
Q gi|254780611|r 20 IHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF 99 (302)
Q Consensus 20 l~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~ 99 (302)
T Consensus 1 ~~~~~~~~~Lt~eee~~L~~~~~~~gd~~Ar~~Li~~nlrLV~~iA~~y~~~g~~~~DLiQeG~iGLi~AiekFDp~rG~ 80 (257)
T PRK08583 1 MKESSQPTKLTKEDVNQWIAEYQENQDEEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIRRYDYSFGR 80 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98676899999999999999998819999999999984999999999862689886179999999999998706986588
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89997577899999985320246001102300358999999997887866244788824677888618983211000000
Q gi|254780611|r 100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCR 179 (302)
Q Consensus 100 ~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~ 179 (302)
T Consensus 81 rFsTYA~~wIr~~I~~~lr~~~~~ir~P~~~-----~~~~~ki~~~~~~l~~~~~r~pt~~eiA~~l~~s~e~v~~~l~~ 155 (257)
T PRK08583 81 SFEAFAVPTIIGEIKRYLRDKTWSVHVPRRI-----KELGPKIKKAVDELTDELQRSPKISEIADRLGVSEEEVLEAMEM 155 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8398789999999999999648711354999-----99988899999999998089987999998959599999999997
Q ss_pred C--CCCCCHHHHCCCCCC-CCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 1--223433552023234-5320000012356870565566666667779999996219999999999982788888989
Q gi|254780611|r 180 L--AGDESLNALINSSDK-NSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLE 256 (302)
Q Consensus 180 ~--~~~~SLd~~i~~~d~-~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~ 256 (302)
T Consensus 156 ~~~~~~~Sld~~~~~d~d~~~~~~~d~~~~----~e~~~----e~~e~~~~l~~~l~~L~erEr~Ii~lry~~~--~t~~ 225 (257)
T PRK08583 156 GKSYQALSVDHSIEADSDGSTVTLLDIVGQ----QEDGY----ELTEQRMILEKILPVLSDREKSIIQCTFIEN--LSQK 225 (257)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCHHHCCCC----CCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCHH
T ss_conf 516897027888877888771204330489----66247----8999999999999549999999999995799--9999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999778999999999999999999999
Q gi|254780611|r 257 NLSSEFEVSRERVRQIEARAFKKVQESIQ 285 (302)
Q Consensus 257 EIa~~lgiS~eRVrQI~~~AL~kLR~~l~ 285 (302)
T Consensus 226 eIa~~lGiS~eRVrQi~~~Al~kLR~~~~ 254 (257)
T PRK08583 226 ETGERLGISQMHVSRLQRQAIKKLREAAF 254 (257)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999896999999999999999877750