HHsearch alignment for GI: 254780611 and conserved domain: PRK08583

>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=100.00  E-value=0  Score=466.37  Aligned_cols=251  Identities=21%  Similarity=0.277  Sum_probs=214.6

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99840799999899999999999828599999999943077875655557999988899999988899898621853456
Q gi|254780611|r   20 IHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF   99 (302)
Q Consensus        20 l~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~   99 (302)
T Consensus         1 ~~~~~~~~~Lt~eee~~L~~~~~~~gd~~Ar~~Li~~nlrLV~~iA~~y~~~g~~~~DLiQeG~iGLi~AiekFDp~rG~   80 (257)
T PRK08583          1 MKESSQPTKLTKEDVNQWIAEYQENQDEEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIRRYDYSFGR   80 (257)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             98676899999999999999998819999999999984999999999862689886179999999999998706986588


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             89997577899999985320246001102300358999999997887866244788824677888618983211000000
Q gi|254780611|r  100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCR  179 (302)
Q Consensus       100 ~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~  179 (302)
T Consensus        81 rFsTYA~~wIr~~I~~~lr~~~~~ir~P~~~-----~~~~~ki~~~~~~l~~~~~r~pt~~eiA~~l~~s~e~v~~~l~~  155 (257)
T PRK08583         81 SFEAFAVPTIIGEIKRYLRDKTWSVHVPRRI-----KELGPKIKKAVDELTDELQRSPKISEIADRLGVSEEEVLEAMEM  155 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             8398789999999999999648711354999-----99988899999999998089987999998959599999999997


Q ss_pred             C--CCCCCHHHHCCCCCC-CCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             1--223433552023234-5320000012356870565566666667779999996219999999999982788888989
Q gi|254780611|r  180 L--AGDESLNALINSSDK-NSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLE  256 (302)
Q Consensus       180 ~--~~~~SLd~~i~~~d~-~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~  256 (302)
T Consensus       156 ~~~~~~~Sld~~~~~d~d~~~~~~~d~~~~----~e~~~----e~~e~~~~l~~~l~~L~erEr~Ii~lry~~~--~t~~  225 (257)
T PRK08583        156 GKSYQALSVDHSIEADSDGSTVTLLDIVGQ----QEDGY----ELTEQRMILEKILPVLSDREKSIIQCTFIEN--LSQK  225 (257)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCHHHCCCC----CCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCHH
T ss_conf             516897027888877888771204330489----66247----8999999999999549999999999995799--9999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999778999999999999999999999
Q gi|254780611|r  257 NLSSEFEVSRERVRQIEARAFKKVQESIQ  285 (302)
Q Consensus       257 EIa~~lgiS~eRVrQI~~~AL~kLR~~l~  285 (302)
T Consensus       226 eIa~~lGiS~eRVrQi~~~Al~kLR~~~~  254 (257)
T PRK08583        226 ETGERLGISQMHVSRLQRQAIKKLREAAF  254 (257)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999896999999999999999877750