HHsearch alignment for GI: 254780611 and conserved domain: PRK09637
>PRK09637 RNA polymerase sigma factor SigZ; Provisional.
Probab=99.47 E-value=5.5e-12 Score=99.63 Aligned_cols=157 Identities=8% Similarity=0.100 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 99999943077875655557999988899999988899898621853456899975778999999853202460011023
Q gi|254780611|r 50 AHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTT 129 (302)
Q Consensus 50 r~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~ 129 (302)
T Consensus 3 ~E~Ly~~y~~~l~~~~~~~~~d~~~AEDivQe~flk~~~~~~~~~~~--~~~~~WL~~IarN~~id~~Rk~~r~------ 74 (181)
T PRK09637 3 LESIWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDG--SSIKSWLYQIANNTIIDFYRKKNRS------ 74 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCC------
T ss_conf 99999999999999999995999999999999999999852205882--3499999999999999999861555------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCC
Q ss_conf 00358999999997887866244788824677888618983211000000122343355202323453200000123568
Q gi|254780611|r 130 ANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD 209 (302)
Q Consensus 130 ~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~ 209 (302)
T Consensus 75 -----------------------~-~~~~----------------------------~~-~~~--------------~~~ 87 (181)
T PRK09637 75 -----------------------E-ELPD----------------------------DL-LFE--------------DEE 87 (181)
T ss_pred -----------------------C-CCCH----------------------------HH-CCC--------------CCC
T ss_conf -----------------------6-7742----------------------------22-146--------------798
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 70565566666667779999996219999999999982788888989999997789999999999999999999997401
Q gi|254780611|r 210 GQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE 289 (302)
Q Consensus 210 ~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~ 289 (302)
T Consensus 88 -~~~~-----~~~e~~~~l~~~l~~Lp~~~R~v~~L~~~eg--~s~~EIA~~L~is~~tVksrl~RAr~~Lr~~LE~~~~ 159 (181)
T PRK09637 88 -REEN-----AKKELAPCLRPFIDALPEKYAEALRLTELEG--LSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEGCCD 159 (181)
T ss_pred -CCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -3224-----9999999999999769999989979998859--9999999998949999999999999999999971278