HHsearch alignment for GI: 254780611 and conserved domain: PRK09637

>PRK09637 RNA polymerase sigma factor SigZ; Provisional.
Probab=99.47  E-value=5.5e-12  Score=99.63  Aligned_cols=157  Identities=8%  Similarity=0.100  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             99999943077875655557999988899999988899898621853456899975778999999853202460011023
Q gi|254780611|r   50 AHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTT  129 (302)
Q Consensus        50 r~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~  129 (302)
T Consensus         3 ~E~Ly~~y~~~l~~~~~~~~~d~~~AEDivQe~flk~~~~~~~~~~~--~~~~~WL~~IarN~~id~~Rk~~r~------   74 (181)
T PRK09637          3 LESIWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDG--SSIKSWLYQIANNTIIDFYRKKNRS------   74 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCC------
T ss_conf             99999999999999999995999999999999999999852205882--3499999999999999999861555------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCC
Q ss_conf             00358999999997887866244788824677888618983211000000122343355202323453200000123568
Q gi|254780611|r  130 ANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD  209 (302)
Q Consensus       130 ~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~  209 (302)
T Consensus        75 -----------------------~-~~~~----------------------------~~-~~~--------------~~~   87 (181)
T PRK09637         75 -----------------------E-ELPD----------------------------DL-LFE--------------DEE   87 (181)
T ss_pred             -----------------------C-CCCH----------------------------HH-CCC--------------CCC
T ss_conf             -----------------------6-7742----------------------------22-146--------------798


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             70565566666667779999996219999999999982788888989999997789999999999999999999997401
Q gi|254780611|r  210 GQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE  289 (302)
Q Consensus       210 ~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~  289 (302)
T Consensus        88 -~~~~-----~~~e~~~~l~~~l~~Lp~~~R~v~~L~~~eg--~s~~EIA~~L~is~~tVksrl~RAr~~Lr~~LE~~~~  159 (181)
T PRK09637         88 -REEN-----AKKELAPCLRPFIDALPEKYAEALRLTELEG--LSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEGCCD  159 (181)
T ss_pred             -CCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             -3224-----9999999999999769999989979998859--9999999998949999999999999999999971278