HHsearch alignment for GI: 254780611 and conserved domain: PRK09640
>PRK09640 RNA polymerase sigma factor SigX; Reviewed.
Probab=99.63 E-value=5.9e-14 Score=112.81 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 998999999999998--285999999999430778756555579999888999999888998986218534568999757
Q gi|254780611|r 29 LEKQEEYVLAKRYRE--HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSM 106 (302)
Q Consensus 29 Lt~eee~~l~~~~~~--~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~ 106 (302)
T Consensus 8 l~D~e---Lv~~~~~g~~gD~~AF~~L~~~y~~~v~~~~~~~~~~~~dAEDl~Qe~flk~~~~l~~~~~~--~~f~~WL~ 82 (188)
T PRK09640 8 LNDEE---LVARVHVELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGK--SKFKTWLY 82 (188)
T ss_pred CCHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHH
T ss_conf 99999---99999827963899999999999999999999990999999999999999999988765898--87899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 78999999853202460011023003589999999978878662447888246778886189832110000001223433
Q gi|254780611|r 107 WWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESL 186 (302)
Q Consensus 107 ~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SL 186 (302)
T Consensus 83 ~Ia~N~~~d~~Rk~----------------------~r~~--------~~------------------------~~~~~~ 108 (188)
T PRK09640 83 SITYNECITQYRKE----------------------RRKR--------RL------------------------MDALSL 108 (188)
T ss_pred HHHHHHHHHHHHHH----------------------CCCC--------CC------------------------CCCCCC
T ss_conf 99999999999986----------------------1545--------55------------------------430002
Q ss_pred HHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 55202323453200000123568705655666666677799999962199999999999827888889899999977899
Q gi|254780611|r 187 NALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSR 266 (302)
Q Consensus 187 d~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~ 266 (302)
T Consensus 109 ~~-~~---~---------~~~~~~---------~~~e~~~~l~~~l~~L~~~~R~vl~L~~~~~--ls~~EIA~~l~is~ 164 (188)
T PRK09640 109 DP-LE---E---------ASEEKA---------PKPEERGGLDRWLVHVNPIDREILVLRFVAE--LEFQEIADIMHMGL 164 (188)
T ss_pred CC-CC---C---------CCCCCC---------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCH
T ss_conf 44-45---6---------863100---------2489999999999848999999999999929--99999999989299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999740
Q gi|254780611|r 267 ERVRQIEARAFKKVQESIQKQV 288 (302)
Q Consensus 267 eRVrQI~~~AL~kLR~~l~~~~ 288 (302)
T Consensus 165 ~tVksrl~RAr~~Lr~~L~~~~ 186 (188)
T PRK09640 165 SATKMRYKRALDKLREKFAGLA 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999864514