HHsearch alignment for GI: 254780611 and conserved domain: PRK11475

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.

Probab=96.65  E-value=0.0061  Score=39.19  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             HCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             2199999999999827888889899999977899999999999999999
Q gi|254780611|r  233 SVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQ  281 (302)
Q Consensus       233 ~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR  281 (302)
T Consensus       133 ~~Lt~rE~eVl~l~a---~G~s~~eIA~~L~~S~kTv~thr~~~m~KLg  178 (205)
T PRK11475        133 RMLSPTEREILRFMS---RGYSMPQIAEQLERNIKTIRAHKFNVMSKLG  178 (205)
T ss_pred             CCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             889858999999997---6999999999978888899999999999829