HHsearch alignment for GI: 254780611 and conserved domain: PRK12511

>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=99.23  E-value=4.4e-10  Score=86.94  Aligned_cols=158  Identities=9%  Similarity=0.091  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             99999943077875655557999988899999988899898621853456899975778999999853202460011023
Q gi|254780611|r   50 AHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTT  129 (302)
Q Consensus        50 r~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~  129 (302)
T Consensus         7 ~~~~~~~-~P~L~rfa~~l~~d~~dAEDlvQetflk~~~~~~~~~~~--~~~~~WL~~IarN~~id~~Rr~~--------   75 (182)
T PRK12511          7 RFDVIDQ-LVPLRRYARSLTRDSAEAEDLVHDALVRALERRASFRSG--GNLRTWLMSILHNAFIDELRRRR--------   75 (182)
T ss_pred             HHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf             9999998-999999999992999999999999999999998866886--64999999999999999998433--------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCC
Q ss_conf             00358999999997887866244788824677888618983211000000122343355202323453200000123568
Q gi|254780611|r  130 ANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD  209 (302)
Q Consensus       130 ~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~  209 (302)
T Consensus        76 --------------~----------~~~~~------------------------~~~~---~~~-~----------~~~~   93 (182)
T PRK12511         76 --------------A----------EARRA------------------------DELV---VEA-D----------ASAP   93 (182)
T ss_pred             --------------C----------CCCCC------------------------CCCC---CCC-C----------CCCC
T ss_conf             --------------4----------43433------------------------3101---235-5----------5689


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             70565566666667779999996219999999999982788888989999997789999999999999999999997401
Q gi|254780611|r  210 GQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE  289 (302)
Q Consensus       210 ~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~  289 (302)
T Consensus        94 ~~~e~-------~~~~~~l~~al~~Lp~~~R~vl~L~~~eg--ls~~EIAe~Lgis~gTVKsrl~RAr~~LR~~le~~g~  164 (182)
T PRK12511         94 AGQEH-------AVRLAQIRDAFFDLPEEQRAALHLVAIEG--LSYQEAANVLGIPIGTLMSRIGRARAALRAFEEGTGP  164 (182)
T ss_pred             CCHHH-------HHHHHHHHHHHHCCCHHHHHHEEEEEECC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             63568-------99999999999869998950112410079--9999999998939999999999999999998631288