HHsearch alignment for GI: 254780611 and conserved domain: PRK12511
>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=99.23 E-value=4.4e-10 Score=86.94 Aligned_cols=158 Identities=9% Similarity=0.091 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 99999943077875655557999988899999988899898621853456899975778999999853202460011023
Q gi|254780611|r 50 AHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTT 129 (302)
Q Consensus 50 r~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~ 129 (302)
T Consensus 7 ~~~~~~~-~P~L~rfa~~l~~d~~dAEDlvQetflk~~~~~~~~~~~--~~~~~WL~~IarN~~id~~Rr~~-------- 75 (182)
T PRK12511 7 RFDVIDQ-LVPLRRYARSLTRDSAEAEDLVHDALVRALERRASFRSG--GNLRTWLMSILHNAFIDELRRRR-------- 75 (182)
T ss_pred HHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf 9999998-999999999992999999999999999999998866886--64999999999999999998433--------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCC
Q ss_conf 00358999999997887866244788824677888618983211000000122343355202323453200000123568
Q gi|254780611|r 130 ANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD 209 (302)
Q Consensus 130 ~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~ 209 (302)
T Consensus 76 --------------~----------~~~~~------------------------~~~~---~~~-~----------~~~~ 93 (182)
T PRK12511 76 --------------A----------EARRA------------------------DELV---VEA-D----------ASAP 93 (182)
T ss_pred --------------C----------CCCCC------------------------CCCC---CCC-C----------CCCC
T ss_conf --------------4----------43433------------------------3101---235-5----------5689
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 70565566666667779999996219999999999982788888989999997789999999999999999999997401
Q gi|254780611|r 210 GQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE 289 (302)
Q Consensus 210 ~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~ 289 (302)
T Consensus 94 ~~~e~-------~~~~~~l~~al~~Lp~~~R~vl~L~~~eg--ls~~EIAe~Lgis~gTVKsrl~RAr~~LR~~le~~g~ 164 (182)
T PRK12511 94 AGQEH-------AVRLAQIRDAFFDLPEEQRAALHLVAIEG--LSYQEAANVLGIPIGTLMSRIGRARAALRAFEEGTGP 164 (182)
T ss_pred CCHHH-------HHHHHHHHHHHHCCCHHHHHHEEEEEECC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 63568-------99999999999869998950112410079--9999999998939999999999999999998631288