HHsearch alignment for GI: 254780611 and conserved domain: PRK12530

>PRK12530 RNA polymerase sigma factor; Provisional.
Probab=99.43  E-value=2.3e-11  Score=95.46  Aligned_cols=173  Identities=16%  Similarity=0.184  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH
Q ss_conf             99430778756555579999888999999888998986218534568999757789999998532024600110230035
Q gi|254780611|r   54 VTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQK  133 (302)
Q Consensus        54 i~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r  133 (302)
T Consensus        15 ~e~yr~~L~~fa~~~l~d~~~AEDlvQEtFlka~~~~~~f~~~--~~f~tWL~~Ia~N~~id~lRk~~r~~~~~------   86 (191)
T PRK12530         15 LEEIRLQMLKFATLQLKDADLAEDVVQEAFTSALKNIDSFKGQ--SALKTWIFAILKNKIIDYIRQRKRFVNES------   86 (191)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCC------
T ss_conf             9999999999999993999999999999999999868863787--72999999999999999999846667721------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCC-CCCCCCH
Q ss_conf             899999999788786624478882467788861898321100000012234335520232345320000012-3568705
Q gi|254780611|r  134 RLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLV-YDHDGQE  212 (302)
Q Consensus       134 ~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~-~~~~~~~  212 (302)
T Consensus        87 ---------------------------~~~------~~~~---------~~~~---~---d~~~~~~~~~~~~~~~~~~e  118 (191)
T PRK12530         87 ---------------------------ELI------EEES---------PNSF---F---DEKGHWKPETYEPSELQDVE  118 (191)
T ss_pred             ---------------------------CCC------CCCC---------CHHH---H---CCCCCCCCCCCCCCCCCCHH
T ss_conf             ---------------------------001------2224---------1001---0---11122343336830216899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6556666666777999999621999999999998278888898999999778999999999999999999999740
Q gi|254780611|r  213 QVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQV  288 (302)
Q Consensus       213 ~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~  288 (302)
T Consensus       119 ----~~~~~~e~~~~l~~~l~~LP~~~R~v~~Lr~~~~--ls~~EIA~~l~is~~tVksrL~RAR~~Lr~~L~~~~  188 (191)
T PRK12530        119 ----QTVYSEEFWLIFEICLNKLPAQQARVFMMREFLE--LSSEQICQECHITTSNLHVLLYRARLQLQACLSKKW  188 (191)
T ss_pred             ----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             ----9999999999999999869999999999999929--999999999896999999999999999999999845