HHsearch alignment for GI: 254780611 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=94.28  E-value=0.35  Score=27.43  Aligned_cols=57  Identities=14%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             HHHHH-HCCCHHHHHHHHHHHC---CCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99996-2199999999999827---8888--89899999977899999999999999999999
Q gi|254780611|r  228 LTRSM-SVLNPRERRIFEARRL---QENP--VTLENLSSEFEVSRERVRQIEARAFKKVQESI  284 (302)
Q Consensus       228 L~~~l-~~L~~rEr~II~~ry~---~~~~--~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l  284 (302)
T Consensus       609 ~~~aL~e~LTDRQ~eaLqtAY~sGyFEwPR~sTGeElAesLgIS~pTfhqHLRaaerKL~~a~  671 (674)
T PRK13558        609 FREELRNDLTDRQLTALQKAYVSGYFEWPRRAEGKQLAESMDIVPSTYHQHLQAAKQKLVGAF  671 (674)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999998760498999999998647577887787899998709883889999999999999987