HHsearch alignment for GI: 254780611 and conserved domain: TIGR00721

>TIGR00721 tfx DNA-binding protein, Tfx family; InterPro: IPR004645 This is a family of Tfx DNA-binding proteins, which is restricted to the archaea. Homology among the members is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.; GO: 0003677 DNA binding.
Probab=97.45  E-value=0.00024  Score=48.62  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             19999999999982788888989999997789999999999999999999
Q gi|254780611|r  234 VLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES  283 (302)
Q Consensus       234 ~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~  283 (302)
T Consensus         6 FLTe~Q~kVL~lR~---kGl~Q~eIAk~LkTtRaNvS~iEkrA~EnIeKa   52 (142)
T TIGR00721         6 FLTERQIKVLELRE---KGLKQKEIAKILKTTRANVSIIEKRALENIEKA   52 (142)
T ss_pred             CCHHHHHHHHHHHH---CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             34065689999863---388878898772672013789888744323776