HHsearch alignment for GI: 254780611 and conserved domain: TIGR03541
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=96.62 E-value=0.0076 Score=38.55 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1999999999998278888898999999778999999999999999999
Q gi|254780611|r 234 VLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQE 282 (302)
Q Consensus 234 ~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~ 282 (302)
T Consensus 171 ~LT~RE~E~L~w~A---~Gkt~~eIa~iL~iSe~TV~~hl~~a~~KLga 216 (232)
T TIGR03541 171 VLSEREREVLAWTA---LGRRQADIAAILGISERTVENHLRSARRKLGV 216 (232)
T ss_pred CCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 98989999999998---79999999999698999999999999998489