HHsearch alignment for GI: 254780611 and conserved domain: pfam04297
>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=97.70 E-value=0.0003 Score=47.97 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=46.1
Q ss_pred HHHHHH-HCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999996-219999999999982788888989999997789999999999999999999
Q gi|254780611|r 227 MLTRSM-SVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283 (302)
Q Consensus 227 ~L~~~l-~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~ 283 (302)
T Consensus 9 ~L~DfYg~LLT~KQ~~~~~lyy~eD--lSL~EIAe~~~iSRQaV~D~ikR~~~~L~~y 64 (101)
T pfam04297 9 YLFDFYQSLLTDKQKNYFELYYLDD--LSLSEIAEEFNVSRQAVYDNIKRTEKMLESY 64 (101)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999989876599999999998763--9899999881985999999999999999999