HHsearch alignment for GI: 254780611 and conserved domain: pfam04297

>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=97.70  E-value=0.0003  Score=47.97  Aligned_cols=55  Identities=27%  Similarity=0.384  Sum_probs=46.1

Q ss_pred             HHHHHH-HCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999996-219999999999982788888989999997789999999999999999999
Q gi|254780611|r  227 MLTRSM-SVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES  283 (302)
Q Consensus       227 ~L~~~l-~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~  283 (302)
T Consensus         9 ~L~DfYg~LLT~KQ~~~~~lyy~eD--lSL~EIAe~~~iSRQaV~D~ikR~~~~L~~y   64 (101)
T pfam04297         9 YLFDFYQSLLTDKQKNYFELYYLDD--LSLSEIAEEFNVSRQAVYDNIKRTEKMLESY   64 (101)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999989876599999999998763--9899999881985999999999999999999