HHsearch alignment for GI: 254780611 and conserved domain: pfam08281

>pfam08281 Sigma70_r4_2 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Probab=98.15  E-value=6.2e-06  Score=59.20  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=48.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999996219999999999982788888989999997789999999999999999
Q gi|254780611|r  226 NMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKV  280 (302)
Q Consensus       226 ~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kL  280 (302)
T Consensus         2 ~~l~~ai~~Lp~~~r~~~~l~~~~~--~s~~eIA~~lg~s~~tVk~~l~RA~~~L   54 (54)
T pfam08281         2 EALLRALEELPPRQREVFLLRYLEG--LSYAEIAELLGISEGTVKSRLSRARKKL   54 (54)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             8999999859999998968799878--5999999998949999999999999719