HHsearch alignment for GI: 254780611 and conserved domain: pfam08281
>pfam08281 Sigma70_r4_2 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Probab=98.15 E-value=6.2e-06 Score=59.20 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999996219999999999982788888989999997789999999999999999
Q gi|254780611|r 226 NMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKV 280 (302)
Q Consensus 226 ~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kL 280 (302)
T Consensus 2 ~~l~~ai~~Lp~~~r~~~~l~~~~~--~s~~eIA~~lg~s~~tVk~~l~RA~~~L 54 (54)
T pfam08281 2 EALLRALEELPPRQREVFLLRYLEG--LSYAEIAELLGISEGTVKSRLSRARKKL 54 (54)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 8999999859999998968799878--5999999998949999999999999719