RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02846
>gnl|CDD|131893 TIGR02846, spore_sigmaK, RNA polymerase sigma-K factor. The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homolog sigma-E (sigma-29) (see TIGR02835), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note that in Bacillus subtilis (and apparently also Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K. Length = 227
Score = 60.1 bits (146), Expect = 6e-10
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 27 PMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGL 86
P+ E++E+ L R +E GD A + L+ +LRLV I + G + +++S G IGL
Sbjct: 29 PLSEEEEKKYL-DRLKE-GDEEARNVLIERNLRLVAHIVKKFSNTGEDVDDLISIGTIGL 86
Query: 87 MQAVKKFDPERGFRLATYS 105
++A+ FDP++G RLATY+
Sbjct: 87 IKAIDSFDPDKGTRLATYA 105