RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02885

>gnl|CDD|131931 TIGR02885, spore_sigF, RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore. Length = 231
 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 45  GDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATY 104
           GD  A  +L+  +LRLV  I   +   G    ++   G IGL++A+ KFD     + +TY
Sbjct: 8   GDKEARDKLIECNLRLVWSIVKRFLNRGYEPEDLFQIGCIGLVKAIDKFDLSYDVKFSTY 67

Query: 105 SMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVA-IA 163
           ++  I   ++ + LR   ++K+  +   K L   +R +K  L       L  E  +  +A
Sbjct: 68  AVPMIMGEIKRF-LRDDGIIKVSRSL--KELARKIRYMKEELS----KELGREPTINELA 120

Query: 164 KKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKN 223
           + L VS  E++         +SL   ++  D +     D +  D   ++   +EK     
Sbjct: 121 EALGVSPEEIVMALESARSPQSLYDTVHQDDGDPIYLLDQIA-DKGSEDSDWLEKI---- 175

Query: 224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283
               L  ++S L+ RER+I   R  ++   T   +++   +S+ +V ++E +  KK++E 
Sbjct: 176 ---ALKEAISKLDERERQIIMLRYFKDK--TQTEVANMLGISQVQVSRLEKKVLKKMKEK 230

Query: 284 I 284
           +
Sbjct: 231 L 231