RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02885
>gnl|CDD|131931 TIGR02885, spore_sigF, RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore. Length = 231
Score = 47.4 bits (113), Expect = 4e-06
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 18/241 (7%)
Query: 45 GDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATY 104
GD A +L+ +LRLV I + G ++ G IGL++A+ KFD + +TY
Sbjct: 8 GDKEARDKLIECNLRLVWSIVKRFLNRGYEPEDLFQIGCIGLVKAIDKFDLSYDVKFSTY 67
Query: 105 SMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVA-IA 163
++ I ++ + LR ++K+ + K L +R +K L L E + +A
Sbjct: 68 AVPMIMGEIKRF-LRDDGIIKVSRSL--KELARKIRYMKEELS----KELGREPTINELA 120
Query: 164 KKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKN 223
+ L VS E++ +SL ++ D + D + D ++ +EK
Sbjct: 121 EALGVSPEEIVMALESARSPQSLYDTVHQDDGDPIYLLDQIA-DKGSEDSDWLEKI---- 175
Query: 224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283
L ++S L+ RER+I R ++ T +++ +S+ +V ++E + KK++E
Sbjct: 176 ---ALKEAISKLDERERQIIMLRYFKDK--TQTEVANMLGISQVQVSRLEKKVLKKMKEK 230
Query: 284 I 284
+
Sbjct: 231 L 231