RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02941

>gnl|CDD|131987 TIGR02941, Sigma_B, RNA polymerase sigma-B factor. This sigma factor is restricted to certain lineages of the order Bacillales including Staphylococcus, Listeria and Bacillus. Length = 255

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 58/270 (21%), Positives = 120/270 (44%), Gaps = 36/270 (13%)

Query: 29  LEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQ 88
           L K++       ++++ +  A  +LV  +  LV  IA  Y   G    ++V  G +GL+ 
Sbjct: 10  LTKEDVIQWIAEFQQNQNGEAQEKLVDHYQNLVYSIAYKYSKGGPMHEDLVQVGMLGLLG 69

Query: 89  AVKKFDPERGFRLATYSMWWIKAAMQEYIL-RSWSLVKIGTTANQKRLFFNLRRLKGHLQ 147
           A++++D   G     +++  I   ++ Y+  ++WS+         +R+     ++K  + 
Sbjct: 70  AIRRYDYSIGNAFEPFAIPTIIGEIKRYLRDKTWSV------HVPRRIKELGPKIKKAID 123

Query: 148 AITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALI------NSSDKNSSQWQ 201
            +TD+  +  +++ IA  L +SE EV+ +   +   +S  AL         SD ++    
Sbjct: 124 ELTDHLQRSPKIIEIADHLGLSEEEVLEI---MEMGQSYRALSVDDVIEADSDGSTVARL 180

Query: 202 DWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSE 261
           D +    DG +Q          RR +L + + +L+ RE+ I             ENLS +
Sbjct: 181 DSVGEVEDGYDQT--------ERRMVLEKILPILSEREKSIIHC-------TFEENLSQK 225

Query: 262 -----FEVSRERVRQIEARAFKKVQESIQK 286
                  +S+  V +++ +A  K++E+   
Sbjct: 226 ETGERLGISQMHVSRLQRQAISKLKEAAFL 255