RPSBLAST alignment for GI: 254780611 and conserved domain: PRK05911

>gnl|CDD|135656 PRK05911, PRK05911, RNA polymerase sigma factor sigma-28; Reviewed. Length = 257

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 44/251 (17%)

Query: 53  LVTSHLRLVVKIAMGYRGYGLP----ISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWW 108
           L+  +L LV  +A      G+P      ++ + G  GL++AV++FDPE+  R   Y+++ 
Sbjct: 28  LIEFYLPLVKNVAHRLIS-GMPSHVKTEDLYASGVEGLVRAVERFDPEKSRRFEGYALFL 86

Query: 109 IKAAMQEYILRS-WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLN 167
           IKAA+ + + +  W    +   AN         +L   + ++  +  K      + + LN
Sbjct: 87  IKAAIIDDLRKQDWVPRSVHQKAN---------KLADAMDSLRQSLGKEPTDGELCEYLN 137

Query: 168 VSESEVIS--MNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDG-----QEQVLIEKEE 220
           +S+ E+     + R A   SLN             +++     D      +E++  E+ E
Sbjct: 138 ISQQELSGWFSSARPALILSLN-------------EEFPCQSDDEAGLALEERIADERAE 184

Query: 221 -------RKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIE 273
                  +K   ++L  ++  L  +ER++      +E  + L+ +     VS  RV QI 
Sbjct: 185 TGYDVVDKKEFSSILAEAILALEEKERKVMALYYYEE--LVLKEIGKILGVSESRVSQIH 242

Query: 274 ARAFKKVQESI 284
           ++A  K++ ++
Sbjct: 243 SKALLKLRATL 253