RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02392
>gnl|CDD|162835 TIGR02392, rpoH_proteo, alternative sigma factor RpoH. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoH and further restricted to the Proteobacteria. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors. Length = 270
Score = 382 bits (983), Expect = e-107
Identities = 137/268 (51%), Positives = 184/268 (68%), Gaps = 5/268 (1%)
Query: 15 GLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLP 74
L YI + +IPML +EEY LAKR REHGDL AA +LV SHLR VVKIA GYRGYGLP
Sbjct: 2 SLDAYIRAVNRIPMLTPEEEYQLAKRLREHGDLDAAKKLVLSHLRFVVKIARGYRGYGLP 61
Query: 75 ISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKR 134
++++ EGNIGLM+AVK+FDPERG RL ++++ WIKA + EYILR+W LVK+ TT Q++
Sbjct: 62 QADLIQEGNIGLMKAVKRFDPERGVRLVSFAVHWIKAEIHEYILRNWRLVKVATTKAQRK 121
Query: 135 LFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAG-DESLNALINSS 193
LFFNLR++K LQ + PE+V AIA++L VSE EV M RL+G D SLNA I+
Sbjct: 122 LFFNLRKMKKRLQGWLN----PEEVEAIAEELGVSEREVREMESRLSGQDMSLNASIDDD 177
Query: 194 DKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPV 253
+ + +LV E L E++ + +R L ++ L+ R RRI EAR L ++ +
Sbjct: 178 EDDGGAPIAYLVDKTSDPEDTLEEEQWEELQRQALANALGSLDARSRRIIEARWLDDDKL 237
Query: 254 TLENLSSEFEVSRERVRQIEARAFKKVQ 281
TL+ L++E+ VS ER+RQIE A KK++
Sbjct: 238 TLQELAAEYGVSAERIRQIEKNAMKKLK 265