>gnl|CDD|162836 TIGR02393, RpoD_Cterm, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. Length = 238

Score = 107 bits (270), Expect = 3e-24 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 22/238 (9%) Query: 49 AAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWW 108 A +LV S+LRLVV IA Y GL +++ EGNIGLM+AV+KFD +G++ +TY+ WW Sbjct: 1 AKKQLVESNLRLVVSIAKKYTNRGLSFLDLIQEGNIGLMKAVEKFDYRKGYKFSTYATWW 60 Query: 109 IKAAMQEYILRSWSLVKI----GTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAK 164 I+ A+ I ++I T N+ L + + L E+ +A+ Sbjct: 61 IRQAITRAIADQARTIRIPVHMVETINK------LIKAERQLTQELGREPTDEE---LAE 111 Query: 165 KLNVSESEVISMNCRLAGDE-SLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKN 223 ++ + +V + ++A + SL I + S D+ + D + + ++ Sbjct: 112 RMGMPAEKVREIK-KIAQEPISLETPIGEEED--SFLGDF-IEDTSIESP--DDYAAKEL 165 Query: 224 RRNMLTRSMSVLNPRERRIFEARR--LQENPVTLENLSSEFEVSRERVRQIEARAFKK 279 R L + L RER++ R L P TLE + EF V+RER+RQIE++A +K Sbjct: 166 LREQLDEVLETLTERERKVLRMRYGLLDGRPHTLEEVGKEFNVTRERIRQIESKALRK 223

RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02393