RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02479

>gnl|CDD|162877 TIGR02479, FliA_WhiG, RNA polymerase sigma factor, FliA/WhiG family. Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium. Length = 224

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 21/236 (8%)

Query: 53  LVTSHLRLVVKIAMGYRGYGLPIS----EVVSEGNIGLMQAVKKFDPERGFRLATYSMWW 108
           L+  +L LV +IA      GLP S    +++  G  GL+ A++++DP RG +  TY++  
Sbjct: 1   LIRRYLPLVKRIAGRLSV-GLPSSVELDDLIQAGMFGLLDAIERYDPSRGAKFETYAVQR 59

Query: 109 IKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNV 168
           I+ AM +  LR    V        ++    L R    L+A        E+   IA++L +
Sbjct: 60  IRGAMLDE-LRRLDWVPRSLRQKARK----LERAIRELEARLGREPTEEE---IAEELGM 111

Query: 169 SESEVISMNCRLAGDE--SLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRN 226
              E       +      SL+ L+ S D   S          +  E+ L    ER+  R 
Sbjct: 112 DLKEYRQALNEINALSLVSLDELLESGDDGGSLIDRIEDDKSEDPEEEL----EREELRE 167

Query: 227 MLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQE 282
            L  ++  L+ RE+ +      +E  + L+ +     ++  RV QI ++A KK++ 
Sbjct: 168 ALAEAIESLSEREQLVLSLYYYEE--LNLKEIGEVLGLTESRVSQIHSQALKKLRA 221