RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02997
>gnl|CDD|163097 TIGR02997, Sig70-cyanoRpoD, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393). Length = 298
Score = 119 bits (301), Expect = 9e-28
Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 80/316 (25%)
Query: 19 YIHEIRKIPMLEKQEEYVLAKRYRE---------------HGDLS--------------- 48
Y+ EI ++P+L +EE LA++ ++ + S
Sbjct: 6 YLQEIGRVPLLTPEEEIELARQVQQMMVLEELREELEEQLGREPSKEEWAAAAGLSEAEL 65
Query: 49 ---------AAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF 99
A +++ ++LRLVV +A Y+ GL + +++ EG++GL +AV+KFDP RG+
Sbjct: 66 RQRLRQGQRAKEKMIKANLRLVVSVAKKYQNRGLELLDLIQEGSLGLERAVEKFDPTRGY 125
Query: 100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITD--NNLKPE 157
+ +TY+ WWI+ + I ANQ R RL H IT+ N +K
Sbjct: 126 KFSTYAYWWIRQGITRAI------------ANQSRTI----RLPIH---ITEKLNKIKKV 166
Query: 158 Q------------VVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLV 205
Q IA+ L + +V + R SL+A + + ++ D L
Sbjct: 167 QRELSQKLGRTPSEAEIAEALELEPEQVRELLQRARQPVSLDAPVGDEED--TELGDLLE 224
Query: 206 YDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEAR--RLQENPVTLENLSSEFE 263
D + E+ + ER++ R L ++ L PRER++ R P+TL +
Sbjct: 225 DDGESPEEQV----ERESLRQDLESLLAELTPRERQVLRLRFGLDGGEPLTLAEIGRRLN 280
Query: 264 VSRERVRQIEARAFKK 279
+SRERVRQIEA+A +K
Sbjct: 281 LSRERVRQIEAKALRK 296