RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02997

>gnl|CDD|163097 TIGR02997, Sig70-cyanoRpoD, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393). Length = 298
 Score =  119 bits (301), Expect = 9e-28
 Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 80/316 (25%)

Query: 19  YIHEIRKIPMLEKQEEYVLAKRYRE---------------HGDLS--------------- 48
           Y+ EI ++P+L  +EE  LA++ ++                 + S               
Sbjct: 6   YLQEIGRVPLLTPEEEIELARQVQQMMVLEELREELEEQLGREPSKEEWAAAAGLSEAEL 65

Query: 49  ---------AAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF 99
                    A  +++ ++LRLVV +A  Y+  GL + +++ EG++GL +AV+KFDP RG+
Sbjct: 66  RQRLRQGQRAKEKMIKANLRLVVSVAKKYQNRGLELLDLIQEGSLGLERAVEKFDPTRGY 125

Query: 100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITD--NNLKPE 157
           + +TY+ WWI+  +   I            ANQ R      RL  H   IT+  N +K  
Sbjct: 126 KFSTYAYWWIRQGITRAI------------ANQSRTI----RLPIH---ITEKLNKIKKV 166

Query: 158 Q------------VVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLV 205
           Q               IA+ L +   +V  +  R     SL+A +   +   ++  D L 
Sbjct: 167 QRELSQKLGRTPSEAEIAEALELEPEQVRELLQRARQPVSLDAPVGDEED--TELGDLLE 224

Query: 206 YDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEAR--RLQENPVTLENLSSEFE 263
            D +  E+ +    ER++ R  L   ++ L PRER++   R       P+TL  +     
Sbjct: 225 DDGESPEEQV----ERESLRQDLESLLAELTPRERQVLRLRFGLDGGEPLTLAEIGRRLN 280

Query: 264 VSRERVRQIEARAFKK 279
           +SRERVRQIEA+A +K
Sbjct: 281 LSRERVRQIEAKALRK 296