RPSBLAST alignment for GI: 254780611 and conserved domain: PRK05949
>gnl|CDD|180321 PRK05949, PRK05949, RNA polymerase sigma factor; Validated. Length = 327
Score = 74.1 bits (182), Expect = 4e-14
Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 52/299 (17%)
Query: 19 YIHEIRKIPMLEKQEEYVLAKR--------------------------YREHGDLS---- 48
Y+HEI ++P+L ++E V K+ + E +LS
Sbjct: 23 YLHEIGRVPLLTHEQEIVYGKQVQQMMSLLEAKEALAKKLGREPSLPEWAEAVNLSETEL 82
Query: 49 ---------AAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF 99
A +++ ++LRLVV IA Y+ + +++ EG +GL + V+KFDP RG+
Sbjct: 83 KQTLKQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGY 142
Query: 100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQV 159
+ +TY+ WWI+ A+ I + +++ +K L ++K + ++ +
Sbjct: 143 KFSTYAYWWIRQAITRAIAQQARTIRLPIHITEK-----LNKIKKTQRELSQKLGRSATP 197
Query: 160 VAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKE 219
IAK+L + S++ + ++ + D ++ + L + +Q + ++
Sbjct: 198 AEIAKELELEPSQI--REYLSMARQPISLDVRVGDNQDTELSELLEDEGPSPDQYITQEL 255
Query: 220 ERKNRRNMLTRSMSVLNPRERRIFEARRLQEN--PVTLENLSSEFEVSRERVRQIEARA 276
R++ N+L L P++R + R E+ ++L + +SRERVRQ+E +A
Sbjct: 256 LRQDLNNLLAE----LTPQQREVLTLRFGLEDGKELSLAKVGERLNLSRERVRQLEHQA 310