RPSBLAST alignment for GI: 254780611 and conserved domain: PRK05949

>gnl|CDD|180321 PRK05949, PRK05949, RNA polymerase sigma factor; Validated. Length = 327
 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 68/299 (22%), Positives = 136/299 (45%), Gaps = 52/299 (17%)

Query: 19  YIHEIRKIPMLEKQEEYVLAKR--------------------------YREHGDLS---- 48
           Y+HEI ++P+L  ++E V  K+                          + E  +LS    
Sbjct: 23  YLHEIGRVPLLTHEQEIVYGKQVQQMMSLLEAKEALAKKLGREPSLPEWAEAVNLSETEL 82

Query: 49  ---------AAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGF 99
                    A  +++ ++LRLVV IA  Y+   +   +++ EG +GL + V+KFDP RG+
Sbjct: 83  KQTLKQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGY 142

Query: 100 RLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQV 159
           + +TY+ WWI+ A+   I +    +++     +K     L ++K   + ++    +    
Sbjct: 143 KFSTYAYWWIRQAITRAIAQQARTIRLPIHITEK-----LNKIKKTQRELSQKLGRSATP 197

Query: 160 VAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKE 219
             IAK+L +  S++          + ++  +   D   ++  + L  +    +Q + ++ 
Sbjct: 198 AEIAKELELEPSQI--REYLSMARQPISLDVRVGDNQDTELSELLEDEGPSPDQYITQEL 255

Query: 220 ERKNRRNMLTRSMSVLNPRERRIFEARRLQEN--PVTLENLSSEFEVSRERVRQIEARA 276
            R++  N+L      L P++R +   R   E+   ++L  +     +SRERVRQ+E +A
Sbjct: 256 LRQDLNNLLAE----LTPQQREVLTLRFGLEDGKELSLAKVGERLNLSRERVRQLEHQA 310