RPSBLAST alignment for GI: 254780611 and conserved domain: PRK07921

>gnl|CDD|181169 PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed. Length = 324
 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 89/314 (28%), Positives = 135/314 (42%), Gaps = 82/314 (26%)

Query: 19  YIHEIRKIPMLEKQEEYVLAKR-----YREH-----GDLSAAHR---------------- 52
           Y++ I K  +L   +E  LAKR     Y EH       LS A +                
Sbjct: 31  YLNGIGKTALLTAADEVELAKRIEAGLYAEHLLETRKRLSEARKRDLAAVVRDGEAARRH 90

Query: 53  LVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAA 112
           L+ ++LRLVV +A  Y G G+P+ +++ EGN+GL++A++KFD  +GF+ +TY+ WWI+ A
Sbjct: 91  LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 150

Query: 113 MQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESE 172
               I R          A+Q R      RL  HL          EQV     KL   + E
Sbjct: 151 ----ITRG--------MADQSRTI----RLPVHLV---------EQV----NKLARIKRE 181

Query: 173 VISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD--------GQEQV-----LIEKE 219
              ++ +L  + +   L   S     +  D L +  D        G ++       IE  
Sbjct: 182 ---LHQQLGREATDEELAEESGIPEEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDS 238

Query: 220 ERKNRRNMLTRSM------SVLNPRERRIFEARRLQ-----ENPVTLENLSSEFEVSRER 268
           E  +  N +   +      SVL   + R  +  RL+       P TL+ +   F +SRER
Sbjct: 239 EATSAENAVIAGLLHTDIRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRER 298

Query: 269 VRQIEARAFKKVQE 282
           VRQIE     K++ 
Sbjct: 299 VRQIEREVMSKLRN 312