RPSBLAST alignment for GI: 254780611 and conserved domain: PRK07921
>gnl|CDD|181169 PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed. Length = 324
Score = 84.4 bits (209), Expect = 3e-17
Identities = 89/314 (28%), Positives = 135/314 (42%), Gaps = 82/314 (26%)
Query: 19 YIHEIRKIPMLEKQEEYVLAKR-----YREH-----GDLSAAHR---------------- 52
Y++ I K +L +E LAKR Y EH LS A +
Sbjct: 31 YLNGIGKTALLTAADEVELAKRIEAGLYAEHLLETRKRLSEARKRDLAAVVRDGEAARRH 90
Query: 53 LVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAA 112
L+ ++LRLVV +A Y G G+P+ +++ EGN+GL++A++KFD +GF+ +TY+ WWI+ A
Sbjct: 91 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQA 150
Query: 113 MQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESE 172
I R A+Q R RL HL EQV KL + E
Sbjct: 151 ----ITRG--------MADQSRTI----RLPVHLV---------EQV----NKLARIKRE 181
Query: 173 VISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD--------GQEQV-----LIEKE 219
++ +L + + L S + D L + D G ++ IE
Sbjct: 182 ---LHQQLGREATDEELAEESGIPEEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDS 238
Query: 220 ERKNRRNMLTRSM------SVLNPRERRIFEARRLQ-----ENPVTLENLSSEFEVSRER 268
E + N + + SVL + R + RL+ P TL+ + F +SRER
Sbjct: 239 EATSAENAVIAGLLHTDIRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRER 298
Query: 269 VRQIEARAFKKVQE 282
VRQIE K++
Sbjct: 299 VRQIEREVMSKLRN 312