RPSBLAST alignment for GI: 254780611 and conserved domain: PRK08583

>gnl|CDD|181489 PRK08583, PRK08583, RNA polymerase sigma factor SigB; Validated. Length = 257
 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 64/272 (23%), Positives = 124/272 (45%), Gaps = 40/272 (14%)

Query: 29  LEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISE-VVSEGNIGLM 87
           L K+E       Y+E+ D  A  +LV  +  LV  +A  Y   G    E +V  G +GL+
Sbjct: 10  LTKEEVNKWIAEYQENQDEEAQEKLVKHYKNLVESLAYKY-SKGQSHHEDLVQVGMVGLL 68

Query: 88  QAVKKFDPERGFRLATYSMWWIKAAMQEYIL-RSWS------LVKIGTTANQKRLFFNLR 140
            A++++DP  G     +++  I   ++ Y+  ++WS      + ++G             
Sbjct: 69  GAIRRYDPSFGRSFEAFAVPTIIGEIKRYLRDKTWSVHVPRRIKELGP------------ 116

Query: 141 RLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNAL-INSSDKNSSQ 199
           ++K  +  +T    +  ++  IA +L VSE EV+     +   +S  AL ++ S +  S 
Sbjct: 117 KIKKAVDELTTELQRSPKISEIADRLGVSEEEVLEA---MEMGKSYQALSVDHSIEADSD 173

Query: 200 WQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLS 259
                + D  GQ++   +  E   +R +L + + VL+ RE+ I +          +ENLS
Sbjct: 174 GSTVTLLDIVGQQE---DGYELTEQRMILEKILPVLSDREKSIIQC-------TFIENLS 223

Query: 260 SE-----FEVSRERVRQIEARAFKKVQESIQK 286
            +       +S+  V +++ +A KK++E+   
Sbjct: 224 QKETGERLGISQMHVSRLQRQAIKKLREAAFL 255