RPSBLAST alignment for GI: 254780611 and conserved domain: COG0568

>gnl|CDD|30914 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]. Length = 342
 Score =  235 bits (600), Expect = 1e-62
 Identities = 106/295 (35%), Positives = 151/295 (51%), Gaps = 14/295 (4%)

Query: 2   NRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHG-DLSAAHRLVTSHLRL 60
            R+           LS YI  I   P+L  +EE  LA+R +    DL A  +LV S+LRL
Sbjct: 55  GREPSERARRPAGRLSFYIRAIEAAPLLTPEEEKALARRLKRGERDLDAKKKLVESNLRL 114

Query: 61  VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
           VV IA  Y G GLP  +++ EGNIGLM+AV+KFDPE+GF+ +TY+ WWI+ A+   I   
Sbjct: 115 VVSIAKKYTGRGLPFLDLIQEGNIGLMKAVEKFDPEKGFKFSTYATWWIRQAITRAIADQ 174

Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
              ++I    +Q  L   LRR+K  L        +      IA++L VS  +V  M  R 
Sbjct: 175 ARTIRIPV--HQVELINKLRRVKRELLQ---ELGREPTPEEIAEELGVSPDKVREMLKRA 229

Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDG-QEQVLIEKEERKNRRNMLTRSMSVLNPRE 239
           +   SL+  I   +   S+  D+L  D     E  +  +  +++   +L      L  RE
Sbjct: 230 SEPISLDTPIGDDE--DSELGDFLEDDKSVSPEDAVERESLKEDLNEVLA---EALTERE 284

Query: 240 RRIFEARRL--QENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVELSS 292
           RR+   R       P TLE L  EF +SRERVRQIEA+A +K++   ++   L S
Sbjct: 285 RRVIRLRFGLDDGEPKTLEELGEEFGISRERVRQIEAKALRKLRRHPERSALLRS 339