RPSBLAST alignment for GI: 254780611 and conserved domain: COG0568
>gnl|CDD|30914 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]. Length = 342
Score = 235 bits (600), Expect = 1e-62
Identities = 106/295 (35%), Positives = 151/295 (51%), Gaps = 14/295 (4%)
Query: 2 NRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHG-DLSAAHRLVTSHLRL 60
R+ LS YI I P+L +EE LA+R + DL A +LV S+LRL
Sbjct: 55 GREPSERARRPAGRLSFYIRAIEAAPLLTPEEEKALARRLKRGERDLDAKKKLVESNLRL 114
Query: 61 VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
VV IA Y G GLP +++ EGNIGLM+AV+KFDPE+GF+ +TY+ WWI+ A+ I
Sbjct: 115 VVSIAKKYTGRGLPFLDLIQEGNIGLMKAVEKFDPEKGFKFSTYATWWIRQAITRAIADQ 174
Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
++I +Q L LRR+K L + IA++L VS +V M R
Sbjct: 175 ARTIRIPV--HQVELINKLRRVKRELLQ---ELGREPTPEEIAEELGVSPDKVREMLKRA 229
Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDG-QEQVLIEKEERKNRRNMLTRSMSVLNPRE 239
+ SL+ I + S+ D+L D E + + +++ +L L RE
Sbjct: 230 SEPISLDTPIGDDE--DSELGDFLEDDKSVSPEDAVERESLKEDLNEVLA---EALTERE 284
Query: 240 RRIFEARRL--QENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVELSS 292
RR+ R P TLE L EF +SRERVRQIEA+A +K++ ++ L S
Sbjct: 285 RRVIRLRFGLDDGEPKTLEELGEEFGISRERVRQIEAKALRKLRRHPERSALLRS 339