RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (503 letters)



>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
          fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
          gallus} (A:119-491)
          Length = 373

 Score = 32.6 bits (72), Expect = 0.12
 Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 48 EILERQFNKLEQAILQVEKQNQKSLHT-SKQDKESDIPKSSVTSKEN 93
            L+++       I  ++   Q+ +    + + + DI   +      
Sbjct: 3  VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCA 49


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.9 bits (70), Expect = 0.35
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)

Query: 390 SITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
           S+  VM I      ES   VV  R ++M+  
Sbjct: 1   SLADVMSI------ESLVEVVFYRGMTMQVA 25


>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc
          finger, propeller cluster, helical repeats, cullin
          repeats, protein binding; HET: DNA; 3.10A {Homo
          sapiens} (C:1-228)
          Length = 228

 Score = 26.9 bits (59), Expect = 6.2
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 14 NLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQN 68
                   +      ++  V +     +PRLP    +  + KL +A+  V+   
Sbjct: 24 PAALAAAPAKPGGAGGSKKLVIKNFR-DRPRLPDNYTQDTWRKLHEAVRAVQSST 77


>3cym_A Uncharacterized protein BAD_0989; structural genomics,
           unknown function, ribonuclease D, exonuclease; 2.10A
           {Bifidobacterium adolescentis ATCC15703} (A:220-337)
          Length = 118

 Score = 26.8 bits (59), Expect = 6.8
 Identities = 4/41 (9%), Positives = 11/41 (26%)

Query: 3   DFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKP 43
           +   + +R      +  P    +I + A          +  
Sbjct: 76  EQDKMFERYAPIQRKIKPSMWKNIIQDALALPPSEWPDVDG 116


>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis,
           transferase, ligase, multifunctional enzyme; HET: PMM;
           2.3A {Saccharomyces cerevisiae} (A:1-224)
          Length = 224

 Score = 26.7 bits (58), Expect = 7.3
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 14/79 (17%)

Query: 10  RAVDNLPENTPERRSHIYEHA----------RNSVARRLESMKPRLPKEILERQFNKLEQ 59
           + +           S I+E             N        ++  L    L +   K+E 
Sbjct: 41  QLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVE----VETLLTPSELLKLCKKIEY 96

Query: 60  AILQVEKQNQKSLHTSKQD 78
             LQ  K       T   D
Sbjct: 97  EELQRVKHFDNGPRTIDLD 115


>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
           decarboxylase, cobalamin, lyase; 1.46A {Salmonella
           enterica} (A:1-35,A:261-364)
          Length = 139

 Score = 26.3 bits (58), Expect = 8.2
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 136 FSCRLREILSFSVNTQHEYDSSVSP-VAAIEHDKSRLRRG--KLAGIFSFPTGSIFWSVH 192
                 ++L FS N   +  +        +  + +R  +   +L  +  +P  + +    
Sbjct: 19  LGISPDQLLDFSANINPQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANY---- 74

Query: 193 NYFFNKTRGLLSFYSALSEHHLF 215
                  R  +     L    + 
Sbjct: 75  -LLLRCEREDIDLQRRLLTQRIL 96


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,537,948
Number of extensions: 154963
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 9
Length of query: 503
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 411
Effective length of database: 1,845,989
Effective search space: 758701479
Effective search space used: 758701479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)