RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(503 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 66.9 bits (163), Expect = 1e-11
Identities = 90/524 (17%), Positives = 145/524 (27%), Gaps = 213/524 (40%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
A D+ P E + V+ +E K ++L + E L+
Sbjct: 49 AADDEPTTPAELVGKFLGY----VSSLVEPSKVGQFDQVLNLCLTEFENCYLE-----GN 99
Query: 71 SLHT----------SKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS--NKHKKLANI 118
+H + K ++ K+ +T++ +S S++ R+ + +L I
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 119 LSVQGKSRTNTNLSPKNFSC--RLREILSFSVNTQHEYDSSVSP-VAAIEHDKSRLRRGK 175
QG NT+ LR++ + Y V + S L R
Sbjct: 160 FGGQG----NTD------DYFEELRDL--YQT-----YHVLVGDLIKFSAETLSELIRTT 202
Query: 176 LAGIFSFPTGSIF----WSVHN--------YFFNKTRGLLSFYSALSEHHLFKYFVF-LI 222
L F G W + N Y LLS +S LI
Sbjct: 203 LDAEKVFTQG--LNILEW-LENPSNTPDKDY-------LLS--IPIS---------CPLI 241
Query: 223 ILLGMAIGVSYSI-----GKSKGSITHFLRRESLDG--GNVDKKNVFS-GIRPKITRRLL 274
++ +A Y + G + G + R L G G+ S G+
Sbjct: 242 GVIQLA---HYVVTAKLLGFTPGEL-----RSYLKGATGH-------SQGL--------- 277
Query: 275 EDGSEVDVGPSTIPVAD----FANTSNIA----FKNYIGGDENSTF--------VLGKKE 318
V I D F + A F +IG + +L ++
Sbjct: 278 -------VTAVAIAETDSWESFFVSVRKAITVLF--FIGVRCYEAYPNTSLPPSIL--ED 326
Query: 319 IEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSAS 378
E EG S +LS + L + ++
Sbjct: 327 SLEN----NEGVP--------SPMLS--------------ISNLTQEQVQDYVN------ 354
Query: 379 MTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISK- 437
K N+ H+ P Q IS+ N N V+S
Sbjct: 355 ---KTNS-------HL-------PAGKQVE------ISLV---NGA-----KN-LVVSGP 382
Query: 438 -------NSYLISLK-GSEED----PFRNSKILEEYRFIDIPIT 469
N L K S D PF K+ RF +P+
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVA 424
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 5e-04
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 19/46 (41%)
Query: 354 EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADIS---LSITHVME 396
EK Q LK L AS LK AD S L+I ME
Sbjct: 18 EK-QALKKL-------------QAS--LKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 65 EKQNQKSLHTS-K--QDKESDIP----KSSV 88
EKQ K L S K D + P K+++
Sbjct: 18 EKQALKKLQASLKLYADDSA--PALAIKATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 37.1 bits (85), Expect = 0.010
Identities = 56/249 (22%), Positives = 96/249 (38%), Gaps = 77/249 (30%)
Query: 281 DVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGK--KEI--EEGNPLIGEGRVFIN-- 334
D+G VA F TS A D+N + + + K + EGNP+IG + F+
Sbjct: 1336 DLG-----VASFHGTSTKA------NDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGH 1384
Query: 335 -KGRGQSSILSGKILWSLQQEKSQGLKGLVIKGD---------IPMIDNAFSASMTLKCN 384
KG + +++G + Q L +I G+ + + S TLK +
Sbjct: 1385 PKGAAGAWMMNGAL---------QILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTD 1435
Query: 385 ADISLSITHVMEIMFSFPKESQDAVV---D--------------LRRISMRKTDNSPSVL 427
++SIT F F ++ A+V D + ++S R+ ++
Sbjct: 1436 GVRAVSITS-----FGFGQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREK-SAYKFF 1489
Query: 428 IDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGA 487
+ I+ N +S E P+ + LEE ++D P+ S K K G+
Sbjct: 1490 HNGMIY----NKLFVS---KEHAPYTDE--LEEDVYLD-PLARVSKDK--------KSGS 1531
Query: 488 DIFKSAIMQ 496
F S +Q
Sbjct: 1532 LTFNSKNIQ 1540
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.2 bits (73), Expect = 0.28
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 28/90 (31%)
Query: 246 LRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG 305
+ RES +DK+ G I E V F+
Sbjct: 2 MTRES-----IDKRAGRRGPNLNIVLTCPECKV-----YPPKIVERFSE----------- 40
Query: 306 GD---ENSTFVLGKKEIEEGNPLIGEGRVF 332
GD VL K ++ E R F
Sbjct: 41 GDVVCALCGLVLSDKLVDTR-S---EWRTF 66
>3bic_A Methylmalonyl-COA mutase, mitochondrial precursor; organic
aciduria, methylmalonyl COA mutase deficiency, metabolic
disease, structural genomics; 2.60A {Homo sapiens}
Length = 762
Score = 31.6 bits (71), Expect = 0.43
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 134 KNFSCRLREILSFSVNTQHEYDSSVSPV----AAIEHDKSRLRRGKLAGIF---SFPTGS 186
+ + + + S S++ H ++ + + R G AG+ P S
Sbjct: 237 EYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDEFAPRLS 296
Query: 187 IFWSVHNYFF 196
FW + F+
Sbjct: 297 FFWGIGMNFY 306
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.4 bits (60), Expect = 7.9
Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 63/243 (25%)
Query: 37 RLESMKPRLPKEILERQFNKLEQAILQV--EKQNQKSLHTSKQDKESDIPKSSVTSKENI 94
R+++ P+ P+ I +L + I+ V E + T+ K+S +PK + + +
Sbjct: 182 RVDASVPK-PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS-VPKGAKIDAQIV 239
Query: 95 FLEPRLRSISSILRSNKHKKLA-------------NILSVQG---KSRTNTNLSPKNFSC 138
P +++ K ++L N+L QG +S +L P+N
Sbjct: 240 IGTP-----GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN--- 291
Query: 139 RLREILSFSVNTQH---EYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYF 195
+I+ FS +Y +P A ++ RL+ +L+
Sbjct: 292 --TQIVLFSATFSERVEKYAERFAPNA----NEIRLKTEELS------------------ 327
Query: 196 FNKTRGLLSFY-SALSEHHLFKYFVFLIILLGM-AIGVSYSIGKSKGSITHFLRRESLDG 253
G+ Y SE H KY V L+ L G+ IG S K K + RR + DG
Sbjct: 328 ---VEGIKQLYMDCQSEEH--KYNV-LVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG 381
Query: 254 GNV 256
V
Sbjct: 382 HTV 384
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,079,072
Number of extensions: 187469
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 15
Length of query: 503
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 407
Effective length of database: 3,365,806
Effective search space: 1369883042
Effective search space used: 1369883042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)