RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (503 letters)



>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 27.0 bits (59), Expect = 3.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 341 SILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIM-- 398
             ++G  L SL       +      GD+P ++NA  A   ++ +A +  +I H  + M  
Sbjct: 3   IQVNGPRLESLVLTYVNAIS----SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQ 58

Query: 399 -FSFPKESQDAVVDLRRISMRK 419
               P ES   ++DL R S R+
Sbjct: 59  KVQLPTESLQELLDLHRDSERE 80


>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Streptococcus mutans [TaxId: 1309]}
          Length = 474

 Score = 27.2 bits (59), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)

Query: 300 FKNYIGGDENSTFVLGKKEIEEGNPLIGE 328
           +KNY+ G+    + L + EI+   P  G 
Sbjct: 4   YKNYVNGE----WKLSENEIKIYEPASGA 28


>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 163

 Score = 26.8 bits (58), Expect = 4.1
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 346 KILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES 405
                L Q     ++ L  K  +      +          + +L      +++F+ PKE 
Sbjct: 77  ADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKNPI-EYALFGGEDYQLLFTHPKER 135

Query: 406 QDAVVDLRRISMRKTDNSPSVLIDSN 431
            +  +D+  I   + +    V +D  
Sbjct: 136 WNPFLDMTEIG--RVEEGEGVFVDGK 159


>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 340

 Score = 26.1 bits (57), Expect = 6.5
 Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 8/43 (18%)

Query: 95  FLEPRLRSISSILRSNK-HKKLANILSVQGKSRTNTNLSPKNF 136
           FLE     ISS+L     H  L    S          L+    
Sbjct: 6   FLETEPTEISSVLAGGYNHPLLRQWQS-------ERQLTKNML 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,756,188
Number of extensions: 81401
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 8
Length of query: 503
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,185,626
Effective search space: 490849164
Effective search space used: 490849164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)