Query gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 432
No_of_seqs 150 out of 1931
Neff 5.6
Searched_HMMs 13730
Date Wed Jun 1 09:05:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780613.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf5a_ c.37.1.10 (A:) Adenylo 100.0 0 0 1235.1 38.8 428 2-432 2-431 (431)
2 d1iwea_ c.37.1.10 (A:) Adenylo 100.0 0 0 1201.5 40.6 423 1-426 4-429 (430)
3 d1p9ba_ c.37.1.10 (A:) Adenylo 100.0 0 0 1201.2 40.2 419 2-427 2-424 (424)
4 d1dj2a_ c.37.1.10 (A:) Adenylo 100.0 0 0 1205.0 35.7 423 1-426 4-429 (429)
5 d1a0ia1 b.40.4.6 (A:241-349) A 88.3 0.067 4.9E-06 30.1 1.0 18 5-22 8-28 (109)
6 d1j8yf2 c.37.1.10 (F:87-297) G 53.3 5.9 0.00043 16.7 4.5 22 316-337 145-166 (211)
7 d1vmaa2 c.37.1.10 (A:82-294) G 40.9 9.1 0.00066 15.4 6.4 25 313-337 145-169 (213)
8 d2qy9a2 c.37.1.10 (A:285-495) 33.7 12 0.00085 14.6 6.2 22 403-424 176-197 (211)
9 d2f09a1 b.61.8.1 (A:1-82) Hypo 33.1 7.3 0.00053 16.1 1.2 40 18-58 4-43 (82)
10 d3duea1 d.98.2.1 (A:20-145) Pu 30.9 13 0.00094 14.3 2.5 26 389-416 73-98 (126)
11 d1uala_ c.116.1.4 (A:) tRNA(m1 30.5 13 0.00096 14.3 3.0 40 68-108 58-97 (252)
12 d2bl5a1 d.51.1.1 (A:1-134) Qua 30.2 13 0.00097 14.3 2.3 15 106-120 22-36 (134)
13 d2fmpa2 a.60.12.1 (A:92-148) D 29.9 7.5 0.00054 16.0 0.8 25 131-155 10-35 (57)
14 d1okkd2 c.37.1.10 (D:97-303) G 29.8 13 0.00098 14.2 6.5 17 321-337 148-164 (207)
15 d1ryla_ d.276.1.1 (A:) Hypothe 29.6 14 0.00099 14.2 5.3 32 184-222 130-161 (164)
16 d1oy5a_ c.116.1.4 (A:) tRNA(m1 28.4 14 0.001 14.1 3.0 39 68-108 56-94 (232)
17 d1gm5a2 b.40.4.9 (A:106-285) R 27.0 7.3 0.00054 16.0 0.4 26 131-156 13-39 (180)
18 d1t6ca1 c.55.1.8 (A:7-132) Exo 25.8 15 0.0011 13.9 1.7 20 396-415 90-109 (126)
19 d1rl2a1 b.34.5.3 (A:126-195) C 22.0 17 0.0012 13.5 1.4 29 42-70 37-68 (70)
No 1
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=1235.06 Aligned_cols=428 Identities=49% Similarity=0.832 Sum_probs=417.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHHHH
Q ss_conf 63999957758676056665531578889995776877765998989999810324203598825977938967999999
Q gi|254780613|r 2 TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAFIS 81 (432)
Q Consensus 2 ~~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L~~ 81 (432)
.++||+|+|||||||||||||||+++|+|||||||+||||||+++++||+|||||||+|+|+++++||+||||||.+|++
T Consensus 2 ~~vvVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~g~~~~lhllPSGil~~~~~~vIG~GvVvdp~~L~~ 81 (431)
T d1qf5a_ 2 NNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMK 81 (431)
T ss_dssp CEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEEETTEEEEESSSCTTTTCTTCEEEECTTSCBCHHHHHH
T ss_pred CEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCEECCCCCEEEECCCEEECHHHHHH
T ss_conf 86999757746677207777561679999994786787858998999999953772662699708988978985999999
Q ss_pred HHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999982898881110440332013700078759988762013465676310135677766654567788750989999
Q gi|254780613|r 82 EIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHIS 161 (432)
Q Consensus 82 Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~~l~ 161 (432)
|++.|+++|++. .+||+||+|||||+|||+++|+++|++|++ ++||||||||||||+||++|+|||++||++++.|+
T Consensus 82 Ei~~L~~~Gi~~-~~rL~IS~rAhli~P~H~~~D~~~E~~rg~--~~iGTTgrGIGPaY~DK~~R~gir~~DL~~~~~l~ 158 (431)
T d1qf5a_ 82 EMKELEDRGIPV-RERLLLSEACPLILDYHVALDNAREKARGA--KAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFA 158 (431)
T ss_dssp HHHHHHTTTCCH-HHHEEECTTCBBCCHHHHHHHHHHHHHHGG--GCCCCCSSSHHHHHHHHHTTCCCBGGGGGCHHHHH
T ss_pred HHHHHHHCCCCC-HHHCCCCCCCCEECCHHHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHCCCCCHHHCCCHHHHH
T ss_conf 999999749972-320166676645351799999999986489--62377887601888856521565000101778899
Q ss_pred HHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCCCC
Q ss_conf 99999999988887-52387657889999998888874301020249999988400787999866531010136877533
Q gi|254780613|r 162 KKIEQLLLHHNALR-RSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240 (432)
Q Consensus 162 ~kl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP~V 240 (432)
+|++.++.+++.++ +.+...+.+.+++.+++.++.++++++++|+..+|++++++|++||||||||+|||+||||||||
T Consensus 159 ~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~dt~~~l~~a~~~gk~iLfEGAQG~lLDid~GtYP~V 238 (431)
T d1qf5a_ 159 EKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238 (431)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTHHHHHHTBCCHHHHHHHHHHHTCCEEEECCSCGGGCTTTSSTTSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCC
T ss_conf 98899998644544302576553256778899999998434200289999999854977998421022110137845432
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 43357431013421558788764999996042323784221356684222534307887786455676665477998899
Q gi|254780613|r 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVRRS 320 (432)
Q Consensus 241 TSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lkya 320 (432)
|||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++|||
T Consensus 239 TSSntt~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~l~~~g~E~GttTGRpRR~GWlD~v~lrya 318 (431)
T d1qf5a_ 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRA 318 (431)
T ss_dssp CSSCCSTHHHHHTTCCCGGGCCEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHHTCBCTTTCCBCEEECEEHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 55665202212026888343435999987500013786588655660777766414778864034105772357888888
Q ss_pred HHHCCCCCCEECCCCCCCCCCCCEEEEEEEE-CCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHHHH
Q ss_conf 9874874000010022135776213523631-887850389993576157779988778886511166988854999999
Q gi|254780613|r 321 VIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNY 399 (432)
Q Consensus 321 ~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~-~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~~y 399 (432)
+++||+|+||||||||||+|++||||++|++ +|++++.||++...+++++|||++||||+++++++++|++||+|||+|
T Consensus 319 ~~ing~~~lalTklDvL~~~~~ikvc~~Y~~~~G~~~~~~P~~~~~l~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~~y 398 (431)
T d1qf5a_ 319 VQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNY 398 (431)
T ss_dssp HHHHTCCEEEEECGGGGTTCSEEEEECEEECTTSCEESSCCSSGGGTTTCEEECCEEECCCSCCTTCCSGGGSCHHHHHH
T ss_pred HHHCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCEEECCCCCHHHHHCCEEEEEECCCCCCCCCCCCCHHHCCHHHHHH
T ss_conf 87525650478731013666753312312237985650388795677077588998689988100687457858999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 999999978957999756985317980586789
Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTLIMSNPFED 432 (432)
Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I~~~~~f~~ 432 (432)
|++||+++||||++||+||+|+|||+++|||+-
T Consensus 399 i~~iE~~~gvpi~~is~GP~R~~tI~~~~~f~~ 431 (431)
T d1qf5a_ 399 IKRIEELTGVPIDIISTGPDRTETMILRDPFDA 431 (431)
T ss_dssp HHHHHHHHSSCEEEEECSSBTTSEEESSCTTTC
T ss_pred HHHHHHHHCCCEEEEEECCCHHHEEEECCCCCC
T ss_conf 999999989998999868880235862078789
No 2
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=0 Score=1201.51 Aligned_cols=423 Identities=40% Similarity=0.689 Sum_probs=400.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHHH
Q ss_conf 96399995775867605666553157888999577687776599898999981032420359882597793896799999
Q gi|254780613|r 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAFI 80 (432)
Q Consensus 1 M~~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L~ 80 (432)
|..+||||+|||||||||||||||+++|+|||||||+||||||++++++|+|||||||+|+|+++|+||+||||||.+|+
T Consensus 4 ~~v~vVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~g~k~~lhllPSGil~~~~~~vIG~GvVidp~~L~ 83 (430)
T d1iwea_ 4 SRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLF 83 (430)
T ss_dssp CCEEEEEESSSSCSSHHHHHHHHHTTCSEEEECSBCTTCCEEEECSSCEEEESSSCGGGGCTTSEEEECTTBEECHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCEECCCCCCEEECCEEEECHHHHH
T ss_conf 86799981784657600888766257999999158778772899899899995378375059972898990898299999
Q ss_pred HHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH-H
Q ss_conf 9999999828988811104403320137000787599887620-1346567631013567776665456778875098-9
Q gi|254780613|r 81 SEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALS-PCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDV-E 158 (432)
Q Consensus 81 ~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg-~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~-~ 158 (432)
+|+++|+++|+....+||+||+|||||||||+++|+++|.++. +++++||||+|||||||+||++|+|||++||+++ +
T Consensus 84 ~Ei~~L~~~gv~~~~~rL~Is~rAhli~P~H~~lD~~~E~~~~~~~~~~IGTTgrGIGPaY~DK~~R~gIR~~DL~~~~~ 163 (430)
T d1iwea_ 84 EEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFD 163 (430)
T ss_dssp HHHHHHHTTTCCSGGGSEEEETTCEECCHHHHHHHHHHHHHHHHHSSCCCCCCSSSHHHHHHHHHHTCSCBHHHHTSCHH
T ss_pred HHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHH
T ss_conf 99999873056554210231254213686246640343321022345321334467061021111214224333000488
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHH-HHHHCCEEEEECCCCCEEECCCCCC
Q ss_conf 999999999999888875238765788999999888887430102024999998-8400787999866531010136877
Q gi|254780613|r 159 HISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLER-ESRKGAHILFEGAQGFLLDNDHGTY 237 (432)
Q Consensus 159 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~-a~~~g~~ILfEGAQG~lLDid~GtY 237 (432)
.|++|+......++.+ ++....+.+++++++..+.+++++++.++...+.. +..++++||||||||+|||+|||||
T Consensus 164 ~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~gk~ILfEGAQG~lLDid~GtY 240 (430)
T d1iwea_ 164 EFSARFKNLAHQHQSM---FPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTY 240 (430)
T ss_dssp HHHHHHHHHHHHHHHS---CTTCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCEEEECCSCGGGCTTTSST
T ss_pred HHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCEEEEECCCCCC
T ss_conf 9999999999988764---0432311799999999888766554135189999998621551787402302553134636
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 53343357431013421558788764999996042323784221356684222534307887786455676665477998
Q gi|254780613|r 238 PFVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASV 317 (432)
Q Consensus 238 P~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~l 317 (432)
||||||||++++|++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++
T Consensus 241 P~VTSSnTt~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfpTEl~~e~~~~l~~~g~E~GttTGRpRR~GW~D~v~l 320 (430)
T d1iwea_ 241 PFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMIL 320 (430)
T ss_dssp TSSCSSCCSTHHHHHHHTCCGGGEEEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCC
T ss_conf 77776775287654237988633003899855543311578666322224579998604876554578774361001345
Q ss_pred HHHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH
Q ss_conf 89998748740000100221357762135236318878503899935761577799887788865111669888549999
Q gi|254780613|r 318 RRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432)
Q Consensus 318 kya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432)
|||+++||+|+||||||||||+|++||||++|+++|++++.||++...+++++|||++||||+++++++++|++||++||
T Consensus 321 r~a~~~ng~~~l~ltklDvL~~~~~ikic~~Y~~~g~~~~~~P~~~~~~~~~~Pvy~~~~GW~~~~~~~~~~~~LP~~a~ 400 (430)
T d1iwea_ 321 RYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQ 400 (430)
T ss_dssp HHHHHHHCCSEEEEECGGGGTTCSEEEEEEEEEETTEECSSCCSSTTHHHHCEEEEEEEECCCSCCTTCCSGGGSCHHHH
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCHHHH
T ss_conf 01110178634999841002357860488899869988124898957854674899978898874316776689279999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEE
Q ss_conf 99999999978957999756985317980
Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIM 426 (432)
Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~ 426 (432)
+||++||+++||||++||+||+|+|||++
T Consensus 401 ~yi~~iE~~~~vpv~~is~GP~R~~ti~l 429 (430)
T d1iwea_ 401 SYVRFVENHMGVAVKWVGVGKSRESMIQL 429 (430)
T ss_dssp HHHHHHHHHHTSCEEEEECSSSTTTEEEC
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHEEEC
T ss_conf 99999999989998999708985675872
No 3
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00 E-value=0 Score=1201.23 Aligned_cols=419 Identities=39% Similarity=0.684 Sum_probs=403.2
Q ss_pred CEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHHHH
Q ss_conf 63999957758676056665531578889995776877765998989999810324203598825977938967999999
Q gi|254780613|r 2 TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAFIS 81 (432)
Q Consensus 2 ~~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L~~ 81 (432)
+++||||+|||||||||||||||+++|+|||||||+||||||++++++|+|||||||+|+|+++++||+||||||.+|++
T Consensus 2 ~~~vVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTV~~~~~k~~lhllPSGil~~~~~~~ig~GvVidp~~L~~ 81 (424)
T d1p9ba_ 2 NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLYDNNISVLGNGMVIHVKSLME 81 (424)
T ss_dssp CEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEEETTEEEEESSSCTTTTSTTCEEEECTTCEECHHHHHH
T ss_pred CEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEECCEEEEEEEECCEEECCCCEEEECCCEEECHHHHHH
T ss_conf 88999677746677208777551579999994676676408998998999960188860199648988978980999999
Q ss_pred HHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999982898881110440332013700078759988762013465676310135677766654567788750989999
Q gi|254780613|r 82 EIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHIS 161 (432)
Q Consensus 82 Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~~l~ 161 (432)
||++|++.+ .+||+||+|||||||||+++|+++|.+|++++++||||+|||||||+||++|+|||++||++++.|+
T Consensus 82 Ei~~l~~~~----~~rL~IS~rahli~P~H~~lD~~~E~~r~~g~~~iGTTgrGIGPaY~dK~~R~gir~~Dl~~~~~l~ 157 (424)
T d1p9ba_ 82 EIESVGGKL----LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFK 157 (424)
T ss_dssp HHHHHCTTG----GGGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSSSHHHHHHHHHTTCCCBGGGGGSHHHHH
T ss_pred HHHHHHCCC----CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999863045----7763573540237860366778765442046766357888660655543310233321113646599
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCCCCC
Q ss_conf 99999999988887523876578899999988888743010202499999884007879998665310101368775334
Q gi|254780613|r 162 KKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 (432)
Q Consensus 162 ~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP~VT 241 (432)
+|++.++..++.+ +.....+.+++.+++..+.++++|+++|+..+|+++++++++||||||||+|||+|||||||||
T Consensus 158 ~kl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~~l~~gk~ILfEGAQG~lLDiD~GtYP~VT 234 (424)
T d1p9ba_ 158 NMYSKLIDHLMDL---YNITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVT 234 (424)
T ss_dssp HHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSSC
T ss_pred HHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCC
T ss_conf 9999998755332---0000001467999999999987455564799999999714746774013014411047445567
Q ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 33574310134215587887649999960423237842213566842225343078877864556766654779988999
Q gi|254780613|r 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVRRSV 321 (432)
Q Consensus 242 SS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lkya~ 321 (432)
||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++|||+
T Consensus 235 SSntt~~~~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfpTEl~~e~g~~l~~~g~E~GttTgRpRR~GWfD~v~lrya~ 314 (424)
T d1p9ba_ 235 SSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVK 314 (424)
T ss_dssp SSCCSHHHHHHTTTCCGGGCCEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67861214430689788522335667653654315798767775166788986188666535686555603245566667
Q ss_pred HHCCCCCCEECCCCCCCCCCCCEEEEEEEEC--CEEEE--CCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH
Q ss_conf 8748740000100221357762135236318--87850--3899935761577799887788865111669888549999
Q gi|254780613|r 322 IINGVKGIALTKLDVLDGLDELKICVGYRMD--GREVD--FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432)
Q Consensus 322 ~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~~--g~~~~--~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432)
++||+|+||||||||||+|++||||++|+.+ |+.++ .||++...+++|+|||++||||++|++++++|++||+|||
T Consensus 315 ~ing~~~l~lTklDvL~~~~~ikvc~~Y~~~~~g~~~~~~~~p~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 394 (424)
T d1p9ba_ 315 CINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAK 394 (424)
T ss_dssp HHHCCSEEEEECGGGGTTCSEEEEEEEEEETTTCCBCCTTCCCCSHHHHTTEEEEEEEEECCCSCCTTCCSGGGSCHHHH
T ss_pred HHCCCCEEEEEEEHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCHHHH
T ss_conf 63478649998442223577536997536268874300377997958865876899983797881106888578029999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEEC
Q ss_conf 999999999789579997569853179805
Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIMS 427 (432)
Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~~ 427 (432)
+||++||++++|||++||+||+|+|||+++
T Consensus 395 ~yi~~IE~~~~vpv~~is~GP~R~~tI~r~ 424 (424)
T d1p9ba_ 395 KYILAIEKYLKTPIVWIGVGPNRKNMIVKK 424 (424)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSTTCEEECC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCEEEEC
T ss_conf 999999999899989997489857068729
No 4
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=0 Score=1205.05 Aligned_cols=423 Identities=39% Similarity=0.712 Sum_probs=411.7
Q ss_pred CC-EEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEE-CCEEEEEEECCCCEECCCCCEEECCCEEECHHH
Q ss_conf 96-3999957758676056665531578889995776877765998-989999810324203598825977938967999
Q gi|254780613|r 1 MT-NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKV-NDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHA 78 (432)
Q Consensus 1 M~-~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~-~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~ 78 (432)
|+ .++|||+|||||||||||||||+++|+|||||||+||||||++ +|++|+|||||||+|+|+++|+||+||||||.+
T Consensus 4 ~~~v~~VvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~~G~~~~lhllPSGil~~~~~~vIg~GvVidp~~ 83 (429)
T d1dj2a_ 4 LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPG 83 (429)
T ss_dssp SCSEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEECSSCCEEEESSSCGGGGSTTCEEEECTTCEECHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCEEEECCCEEEEEECCCCEEECCCCEEEECCCEEECHHH
T ss_conf 56467998478566771088887734599999925877887379956984999805683771399728989948986999
Q ss_pred HHHHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999982898881110440332013700078759988762013465676310135677766654567788750989
Q gi|254780613|r 79 FISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVE 158 (432)
Q Consensus 79 L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~ 158 (432)
|++||+.|+++|++.. +||+||+|||||+|+|+++|+++|.++++ ++||||+|||||||+||++|+|||++||++++
T Consensus 84 L~~Ei~~L~~~g~~~~-~~l~is~~ahli~p~H~~~d~~~E~~~~~--~~iGTTgrGIGPaY~dK~~R~giR~~DL~~~~ 160 (429)
T d1dj2a_ 84 LFKEIDGLESNGVSCK-GRILVSDRAHLLFDFHQEVDGLRESELAK--SFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMD 160 (429)
T ss_dssp HHHHHHHHHTTTCCCT-TTEEEESSSEECCHHHHHHHHHHHHHSCS--CCCCCCSCCHHHHHHHHHHTCCCBGGGGGCTT
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
T ss_conf 9999999875203444-42111155555674678888888765322--10243468645898843235774202203378
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCC
Q ss_conf 99999999999988887523876578899999988888743010202499999884007879998665310101368775
Q gi|254780613|r 159 HISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 (432)
Q Consensus 159 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP 238 (432)
.|++|++.+..+++.+++.++..+.+.+++++++.++.++++||++|+..+++++++++++||||||||+|||+||||||
T Consensus 161 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~al~~gk~ILfEGAQG~lLDid~GtYP 240 (429)
T d1dj2a_ 161 TLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 240 (429)
T ss_dssp THHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHTTTEECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCEEEEECCCCCC
T ss_conf 99999999888899996445666667799999999999986556530099999999758848997465305630257444
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33433574310134215587887649999960423237842213566842225343078877864556766654779988
Q gi|254780613|r 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVR 318 (432)
Q Consensus 239 ~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lk 318 (432)
|||||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++|
T Consensus 241 ~VTSSntt~~~~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfpTEl~~e~g~~lr~~g~E~GttTGRpRR~GW~D~v~lr 320 (429)
T d1dj2a_ 241 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALK 320 (429)
T ss_dssp SSCSSCCSTHHHHHTTTCCTTTCCCEEEEEESEEEESSSSCCTTBCCSHHHHHHHHHHTCBCTTTCCBCEEEEEEHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 24547863755543238997410058888520413525785444566516677763346535656887756434466664
Q ss_pred HHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEE-CCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH
Q ss_conf 999874874000010022135776213523631-8878503899935761577799887788865111669888549999
Q gi|254780613|r 319 RSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432)
Q Consensus 319 ya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~-~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432)
||+++||+|+||||||||||+|++||||++|+. ||+.++.||++...+++++|||++||||+++++++++|++||++||
T Consensus 321 ya~~~ng~~~l~ltklDvL~~~~~ikvc~~Y~~~~g~~~~~~p~~~~~~~~~~pvy~~~~GW~~~~~~~~~~~~LP~~a~ 400 (429)
T d1dj2a_ 321 FSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQ 400 (429)
T ss_dssp HHHHHHTCSEEEEECGGGGGGCSEEEEEEEEECSSSCBCCSCCSCHHHHHHCEEEEEEEECCCSCCTTCCSSTTSCHHHH
T ss_pred HHHEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCHHHH
T ss_conf 64100467548997001246775367999747489977155897957856675899976897872116877478289999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEE
Q ss_conf 99999999978957999756985317980
Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIM 426 (432)
Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~ 426 (432)
+||++||+++||||++||+||+|+|||++
T Consensus 401 ~yi~~iE~~~gvpi~~is~GP~R~~tI~r 429 (429)
T d1dj2a_ 401 QYVERIEELVGVPIHYIGIGPGRDALIYK 429 (429)
T ss_dssp HHHHHHHHHHCSCEEEEECSSSSSCEEEC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCEEEC
T ss_conf 99999999989998999758796647619
No 5
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]}
Probab=88.26 E-value=0.067 Score=30.14 Aligned_cols=18 Identities=39% Similarity=1.110 Sum_probs=14.6
Q ss_pred EEEECCCCCCCH---HHHHHH
Q ss_conf 999577586760---566655
Q gi|254780613|r 5 VVVGLQWGDEGK---GKIVDW 22 (432)
Q Consensus 5 vVvG~qwGDEGK---Gkivd~ 22 (432)
+|+|++||++|| ||++-|
T Consensus 8 ~Vvg~~wGt~G~ANeGkViGf 28 (109)
T d1a0ia1 8 IIQGLVWGTKGLANEGKVIGF 28 (109)
T ss_dssp EEEEEECCCTTTSSCSSCCEE
T ss_pred EEEEEECCCCCCCCCCCEEEE
T ss_conf 499552489774567638889
No 6
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=53.27 E-value=5.9 Score=16.68 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCCCCEECCCCCC
Q ss_conf 9889998748740000100221
Q gi|254780613|r 316 SVRRSVIINGVKGIALTKLDVL 337 (432)
Q Consensus 316 ~lkya~~ing~~~l~lTKlDvL 337 (432)
.........+++++++||+|-=
T Consensus 145 ~~~~~~~~~~~~~lI~TKlDet 166 (211)
T d1j8yf2 145 LASKFNQASKIGTIIITKMDGT 166 (211)
T ss_dssp HHHHHHHHCTTEEEEEECTTSC
T ss_pred HHHHHHCCCCCCEEEEECCCCC
T ss_conf 8766530367553788603688
No 7
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=40.94 E-value=9.1 Score=15.41 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHCCCCCCEECCCCCC
Q ss_conf 7799889998748740000100221
Q gi|254780613|r 313 DLASVRRSVIINGVKGIALTKLDVL 337 (432)
Q Consensus 313 Dlv~lkya~~ing~~~l~lTKlDvL 337 (432)
++......-+.-+++++++||||-=
T Consensus 145 ~~~~~~~~~~~~~~~~lI~TKlDe~ 169 (213)
T d1vmaa2 145 GLVQAKIFKEAVNVTGIILTKLDGT 169 (213)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 3556565401227865898424678
No 8
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=33.66 E-value=12 Score=14.64 Aligned_cols=22 Identities=14% Similarity=0.477 Sum_probs=15.2
Q ss_pred HHHHHCCCEEEEEECCCCCEEE
Q ss_conf 9999789579997569853179
Q gi|254780613|r 403 IEEVLEVPVALLSIGPERENTL 424 (432)
Q Consensus 403 IE~~~gvpI~~Is~GP~R~~~I 424 (432)
+-...+.||.++|+|.+-++..
T Consensus 176 ~~~~~~~Pi~~i~~Gq~v~Dl~ 197 (211)
T d2qy9a2 176 VADQFGIPIRYIGVGERIEDLR 197 (211)
T ss_dssp HHHHHCCCEEEEECSSSGGGEE
T ss_pred HHHHHCCCEEEEECCCCCCCCC
T ss_conf 9999897979996799810374
No 9
>d2f09a1 b.61.8.1 (A:1-82) Hypothetical protein YdhA {Escherichia coli [TaxId: 562]}
Probab=33.15 E-value=7.3 Score=16.07 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCC
Q ss_conf 66655315788899957768777659989899998103242
Q gi|254780613|r 18 KIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSG 58 (432)
Q Consensus 18 kivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG 58 (432)
..+.|-|..-.+.|+|..+.+ --++..+|+.+.|.+.+||
T Consensus 4 ~t~~Y~C~~~~~~v~~~~~~~-~a~l~~~g~~~~L~~~~Sa 43 (82)
T d2f09a1 4 DTLEYQCDEKPLTVKLNNPRQ-EVSFVYDNQLLHLKQGISA 43 (82)
T ss_dssp BCCCCCCSSSCCCEEECTTSS-EEEEESSSSEEEEEECSCS
T ss_pred CCEEEECCCEEEEEEECCCCC-EEEEEECCEEEEEEEECCC
T ss_conf 158998599599999938898-7999999999998785135
No 10
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987 {Bacteroides vulgatus [TaxId: 821]}
Probab=30.91 E-value=13 Score=14.34 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8885499999999999997895799975
Q gi|254780613|r 389 FADLPIQARNYIRKIEEVLEVPVALLSI 416 (432)
Q Consensus 389 ~~~LP~~a~~yi~~IE~~~gvpI~~Is~ 416 (432)
...||...++||+. ++-+..|.-|.-
T Consensus 73 ~~~lP~~V~~~i~~--~yp~~~I~~iek 98 (126)
T d3duea1 73 VAVVPDAIKKYVAT--NYPDAKMLKIER 98 (126)
T ss_dssp GGGSCHHHHHHHHH--HSTTCCEEEEEE
T ss_pred HHHCCHHHHHHHHH--HCCCCEEEEEEE
T ss_conf 48778899999997--789988999997
No 11
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=30.50 E-value=13 Score=14.30 Aligned_cols=40 Identities=5% Similarity=0.007 Sum_probs=28.2
Q ss_pred ECCCEEECHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCC
Q ss_conf 77938967999999999999828988811104403320137
Q gi|254780613|r 68 IGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLIL 108 (432)
Q Consensus 68 ig~GvVidp~~L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~ 108 (432)
=|+|||+-|+-+.+-++.+++..-. ....++.|++-...+
T Consensus 58 GGpGMVmk~ePl~~ai~~~~~~~~~-~~~vI~lSP~Gk~f~ 97 (252)
T d1uala_ 58 GGPGMLMMVQPLRDAIHTAKAAAGE-GAKVIYLSPQGRKLD 97 (252)
T ss_dssp CCSCCEECHHHHHHHHHHHHHHHCT-TCEEEEEEEEEEECC
T ss_pred CCCCCEEECHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHH
T ss_conf 9986304135688999997640377-783798889987503
No 12
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=30.18 E-value=13 Score=14.26 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 137000787599887
Q gi|254780613|r 106 LILSIHRDLDMLREG 120 (432)
Q Consensus 106 ii~P~H~~~D~~~E~ 120 (432)
|+=|--..+-++++.
T Consensus 22 IiGPrG~t~K~le~e 36 (134)
T d2bl5a1 22 ILGPRGLTAKQLEAE 36 (134)
T ss_dssp HTTTTHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
T ss_conf 877997349999998
No 13
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.88 E-value=7.5 Score=15.98 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHC
Q ss_conf 63101356777666545677-88750
Q gi|254780613|r 131 TTQRGIGPAYEDRVGRRAIR-VMDLT 155 (432)
Q Consensus 131 TTgrGIGpaY~Dk~~R~giR-~~DL~ 155 (432)
|.=-||||+-+.+..+.|+| +.||.
T Consensus 10 ~~I~GvGp~~A~~l~~~Gi~ti~dLr 35 (57)
T d2fmpa2 10 TRVSGIGPSAARKFVDEGIKTLEDLR 35 (57)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 53443149999999994899899997
No 14
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=29.78 E-value=13 Score=14.22 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.1
Q ss_pred HHHCCCCCCEECCCCCC
Q ss_conf 98748740000100221
Q gi|254780613|r 321 VIINGVKGIALTKLDVL 337 (432)
Q Consensus 321 ~~ing~~~l~lTKlDvL 337 (432)
-..-+++++++||+|-=
T Consensus 148 ~~~~~~~~lI~TKlDet 164 (207)
T d1okkd2 148 HEAVGLTGVIVTKLDGT 164 (207)
T ss_dssp HHHHCCSEEEEECTTSS
T ss_pred HHCCCCCEEEEECCCCC
T ss_conf 02138864898336888
No 15
>d1ryla_ d.276.1.1 (A:) Hypothetical protein yfbM {Escherichia coli [TaxId: 562]}
Probab=29.61 E-value=14 Score=14.20 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEE
Q ss_conf 889999998888874301020249999988400787999
Q gi|254780613|r 184 LYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILF 222 (432)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILf 222 (432)
..++..++++.+.+.++ .+.+++.++|..|||
T Consensus 130 e~~e~~e~l~~~f~~L~-------~Fy~~Aa~~~~~vl~ 161 (164)
T d1ryla_ 130 LEGQLFASIMLDMEKLI-------SAYRRMLRQGNHALT 161 (164)
T ss_dssp GHHHHHHHHHHHHHHHH-------HHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHCCCEEEE
T ss_conf 04689999999999999-------999999977990899
No 16
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=28.43 E-value=14 Score=14.06 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=27.7
Q ss_pred ECCCEEECHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCC
Q ss_conf 77938967999999999999828988811104403320137
Q gi|254780613|r 68 IGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLIL 108 (432)
Q Consensus 68 ig~GvVidp~~L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~ 108 (432)
=|+|||+-|+-+.+-++.+++..-. ...++.|++....+
T Consensus 56 GGpGMVm~~ePl~~Ai~~~~~~~~~--~~vI~lSP~G~~~~ 94 (232)
T d1oy5a_ 56 GLPGMVLKPEPIYEAYDYVVENYGK--PFVLITEPWGEKLN 94 (232)
T ss_dssp CCSSCEECHHHHHHHHHHHHHHHCC--CEEEEECTTBCCCC
T ss_pred CCCCEEEEHHHHHHHHHHHHHHCCC--CCEEEECHHHCCCC
T ss_conf 9986188603799999987640467--71475251211104
No 17
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.00 E-value=7.3 Score=16.04 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHCC
Q ss_conf 63101356777666545677-887509
Q gi|254780613|r 131 TTQRGIGPAYEDRVGRRAIR-VMDLTD 156 (432)
Q Consensus 131 TTgrGIGpaY~Dk~~R~giR-~~DL~~ 156 (432)
+.-+||||..+.+.++.||. +.||+-
T Consensus 13 ~~lkGvGpk~~~~L~klgI~ti~DLL~ 39 (180)
T d1gm5a2 13 QYAKGVGPNRKKKLKKLGIETLRDLLE 39 (180)
T ss_dssp SSSSSCCHHHHHHHHTTTCCSSGGGTS
T ss_pred HHCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 443886899999999809994999987
No 18
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}
Probab=25.75 E-value=15 Score=13.94 Aligned_cols=20 Identities=10% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999999999789579997
Q gi|254780613|r 396 ARNYIRKIEEVLEVPVALLS 415 (432)
Q Consensus 396 a~~yi~~IE~~~gvpI~~Is 415 (432)
...+++.|++.+|.++.+||
T Consensus 90 ~~~~~~~i~~~tgi~i~Iis 109 (126)
T d1t6ca1 90 AEEFLERVKREVGLVVEVIT 109 (126)
T ss_dssp HHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999998799969907
No 19
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.96 E-value=17 Score=13.51 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEECCEEEEEEECCCC---EECCCCCEEECC
Q ss_conf 59989899998103242---035988259779
Q gi|254780613|r 42 TLKVNDIVYKLSLLPSG---VVRPDKMSIIGS 70 (432)
Q Consensus 42 TVv~~~~~~~~hllPSG---~~~p~~~~~ig~ 70 (432)
+|+-.+.+|+.=.|||| .++++|...||.
T Consensus 37 ~ii~k~~~~~~vkLpSge~r~i~~~c~AtIG~ 68 (70)
T d1rl2a1 37 QVLGKEGKYVIVRLASGEVRMILGKCRATVGE 68 (70)
T ss_dssp EEEEEETTEEEEECTTSCEEEEETTSEEEESC
T ss_pred EEEEEECCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf 89998078369990798889899868299704
Done!