RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (432 letters)



>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
           {Escherichia coli [TaxId: 562]}
          Length = 431

 Score =  449 bits (1155), Expect = e-127
 Identities = 208/431 (48%), Positives = 288/431 (66%), Gaps = 5/431 (1%)

Query: 3   NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62
           NVVV+G QWGDEGKGKIVD L+E A  +VR+QGG+NAGHTL +N     L L+PSG++R 
Sbjct: 3   NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRE 62

Query: 63  DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122
           +  SIIG+ VV+ P A + E++ L  +GI V    L       LIL  H  LD  RE A 
Sbjct: 63  NVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACP-LILDYHVALDNAREKAR 121

Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF-GEK 181
                 IGTT RGIGPAYED+V RR +RV DL D E  ++K+++++ +HN    ++   +
Sbjct: 122 G--AKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 179

Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241
            V Y+ +L++ M   + +   +  +  LL++  ++G  ++FEGAQG LLD DHGTYP+VT
Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239

Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301
           SSNT +   + GSG+ P  + YVLG++KAY+TRVG GPFPTEL ++TG+FL + G EFG 
Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299

Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLP 360
            T R+RR GWLD  +VRR+V +N + G  LTKLDVLDGL E+K+CV YRM DGREV   P
Sbjct: 300 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359

Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420
             +      EP+Y  + GW +ST G++  + LP  A NYI++IEE+  VP+ ++S GP+R
Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419

Query: 421 ENTLIMSNPFE 431
             T+I+ +PF+
Sbjct: 420 TETMILRDPFD 430


>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 430

 Score =  424 bits (1091), Expect = e-120
 Identities = 169/424 (39%), Positives = 240/424 (56%), Gaps = 4/424 (0%)

Query: 5   VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDK 64
           VV+G QWGDEGKGK+VD L+ +AD++ R QGGNNAGHT+ V+   Y   LLPSG++    
Sbjct: 8   VVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKA 67

Query: 65  MSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSP 124
           +S IG+ VV+       E E    +G+      L I++ A L+   H+ +D L+E     
Sbjct: 68  VSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQA 127

Query: 125 -CGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEKEV 183
             G +IGTT++GIGP Y  +  R  +R+ DL           + L H +  +  F   E+
Sbjct: 128 QEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQH--QSMFPTLEI 185

Query: 184 LYKTILEELMYAREKILPFMDVIWSLLERESRKGA-HILFEGAQGFLLDNDHGTYPFVTS 242
             +  L+ L    E+I P +      +          +L EGA   LLD D GTYPFVTS
Sbjct: 186 DVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTYPFVTS 245

Query: 243 SNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTV 302
           SN        G GI P ++G V GVVKAYTTRVG G FPTE  N+ GD L+  G E+G  
Sbjct: 246 SNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVT 305

Query: 303 TNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDD 362
           T R+RRCGWLDL  +R + ++NG   +ALTKLD+LD L E+K+ + Y+++G+ + + P +
Sbjct: 306 TGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPAN 365

Query: 363 SIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPEREN 422
                + E  Y  L GWK  T G R + DLP QA++Y+R +E  + V V  + +G  RE+
Sbjct: 366 QEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRES 425

Query: 423 TLIM 426
            + +
Sbjct: 426 MIQL 429


>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
           parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 424

 Score =  424 bits (1090), Expect = e-120
 Identities = 164/429 (38%), Positives = 234/429 (54%), Gaps = 11/429 (2%)

Query: 2   TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVR 61
             V ++G QWGDEGKGKI+D LSE +D+  RF GG NAGHT+ VND  Y L LLP GV+ 
Sbjct: 2   NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLY 61

Query: 62  PDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGA 121
            + +S++G+ +V+   + + EIES+  + +    + L ++N A ++  IH+ +D ++E  
Sbjct: 62  DNNISVLGNGMVIHVKSLMEEIESVGGKLL----DRLYLSNKAHILFDIHQIIDSIQETK 117

Query: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEK 181
               G  IGTT+RGIGP Y  +  R  IR+  L + E+      +L+ H   L       
Sbjct: 118 KLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYN---IT 174

Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241
           E   +  L        K+   +  + S +         +L EGA   +LD D GTYP+VT
Sbjct: 175 EYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVT 234

Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301
           SS T       G GI    L  V+GVVK+Y TRVG GPF TEL N  G +L+E G E+GT
Sbjct: 235 SSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGT 294

Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGR----EVD 357
            T R RRCGWLD+  +     IN +  I LTKLDVL GL+E+ +CV ++        E  
Sbjct: 295 TTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKG 354

Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417
             P +      +EPVY    GWK+  +    F +LP  A+ YI  IE+ L+ P+  + +G
Sbjct: 355 CYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGVG 414

Query: 418 PERENTLIM 426
           P R+N ++ 
Sbjct: 415 PNRKNMIVK 423


>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 429

 Score =  410 bits (1054), Expect = e-115
 Identities = 162/428 (37%), Positives = 237/428 (55%), Gaps = 6/428 (1%)

Query: 1   MTNV-VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVND-IVYKLSLLPSG 58
           ++ V  V+G QWGDEGKGK+VD L+++ D++ R QGG NAGHT+  ++   + L L+PSG
Sbjct: 4   LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSG 63

Query: 59  VVRPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLR 118
           ++  D   +IG+ VVV       EI+ L   G+      L       L         +  
Sbjct: 64  ILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRE 123

Query: 119 EGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178
                   + IGTT+RGIGPAY  +V R  IRV DL  ++ + +K++ LL    A  + F
Sbjct: 124 S---ELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGF 180

Query: 179 GEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238
                + +  +E      +++ P++      +     +   +L EG Q  +LD D GTYP
Sbjct: 181 KYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 240

Query: 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKE 298
           FVTSS+  +     G GI+P  +G ++GVVKAYTTRVG GPFPTE     GD L+  G+E
Sbjct: 241 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQE 300

Query: 299 FGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVD 357
           FGT T R RRCGWLD+ +++ S  ING   + LTKLDVL  L+E+++ V Y+  DG  V 
Sbjct: 301 FGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVK 360

Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417
             P D          Y +L GWK   + +R ++DLP  A+ Y+ +IEE++ VP+  + IG
Sbjct: 361 SFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIG 420

Query: 418 PERENTLI 425
           P R+  + 
Sbjct: 421 PGRDALIY 428


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
           (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 27.0 bits (59), Expect = 3.0
 Identities = 4/20 (20%), Positives = 12/20 (60%)

Query: 67  IIGSSVVVDPHAFISEIESL 86
           I+GS+ ++ P   + ++  +
Sbjct: 568 ILGSTHILTPEGLLRDLRKI 587


>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 180

 Score = 27.1 bits (59), Expect = 3.1
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 18/72 (25%)

Query: 344 KICVGYRMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRK- 402
                 + +    +  P +  Y  R  P+Y +  G  Q                  +RK 
Sbjct: 124 SNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQ----------------KQMRKI 167

Query: 403 IEEVLE-VPVAL 413
            EE +  +  +L
Sbjct: 168 FEENIPSLCCSL 179


>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 589

 Score = 26.9 bits (59), Expect = 3.6
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 67  IIGSSVVVDPHAFISEIESL 86
           +IGS+ ++ P   +  ++ L
Sbjct: 563 LIGSTHILTPQKLLDTLKKL 582


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 26.6 bits (58), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 67  IIGSSVVVDPHAFISEIESL 86
           + GS+ +  P  F++EI  L
Sbjct: 628 MYGSTAITTPAEFLNEISRL 647


>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 265

 Score = 26.2 bits (57), Expect = 5.2
 Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 100 IANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEH 159
           I ++ ++    H ++D++  G        +G  +           G   I  +       
Sbjct: 89  IKHDIAVY-VSHTNIDIVENGLNDWFCQMLGIEETTYLQETGPERGIGRIGNIQPQTFWE 147

Query: 160 ISKKIEQLLLHHNALRRSFGEKEVLYKTI 188
           ++++++Q +   ++LR    +++ L K I
Sbjct: 148 LAQQVKQ-VFDLDSLRMVHYQEDDLQKPI 175


>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase
          {Bacteriophage T7 [TaxId: 10760]}
          Length = 109

 Score = 26.2 bits (57), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 3/19 (15%)

Query: 5  VVVGLQWGDEGK---GKIV 20
          ++ GL WG +G    GK++
Sbjct: 8  IIQGLVWGTKGLANEGKVI 26


>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 173 ALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERE 213
             +R +     LY  ++E ++ + E+ L   +    LL   
Sbjct: 63  GSQR-YKLGVRLYYRVMESMLKSEEERLSIQNFS-KLLNDN 101


>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus
           subtilis [TaxId: 1423]}
          Length = 223

 Score = 25.2 bits (55), Expect = 9.8
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 401 RKIEEVLEVPVALLSIGPERE 421
                V +VP+ L+ +  + E
Sbjct: 155 LAEYNVFDVPIRLVGLIEDFE 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,657,718
Number of extensions: 80674
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 19
Length of query: 432
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,199,356
Effective search space: 412578464
Effective search space used: 412578464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)