RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] (432 letters) >d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Escherichia coli [TaxId: 562]} Length = 431 Score = 449 bits (1155), Expect = e-127 Identities = 208/431 (48%), Positives = 288/431 (66%), Gaps = 5/431 (1%) Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62 NVVV+G QWGDEGKGKIVD L+E A +VR+QGG+NAGHTL +N L L+PSG++R Sbjct: 3 NVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRE 62 Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122 + SIIG+ VV+ P A + E++ L +GI V L LIL H LD RE A Sbjct: 63 NVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACP-LILDYHVALDNAREKAR 121 Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF-GEK 181 IGTT RGIGPAYED+V RR +RV DL D E ++K+++++ +HN ++ + Sbjct: 122 G--AKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAE 179 Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 V Y+ +L++ M + + + + LL++ ++G ++FEGAQG LLD DHGTYP+VT Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239 Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301 SSNT + + GSG+ P + YVLG++KAY+TRVG GPFPTEL ++TG+FL + G EFG Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299 Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLP 360 T R+RR GWLD +VRR+V +N + G LTKLDVLDGL E+K+CV YRM DGREV P Sbjct: 300 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359 Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 + EP+Y + GW +ST G++ + LP A NYI++IEE+ VP+ ++S GP+R Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419 Query: 421 ENTLIMSNPFE 431 T+I+ +PF+ Sbjct: 420 TETMILRDPFD 430 >d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse (Mus musculus) [TaxId: 10090]} Length = 430 Score = 424 bits (1091), Expect = e-120 Identities = 169/424 (39%), Positives = 240/424 (56%), Gaps = 4/424 (0%) Query: 5 VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDK 64 VV+G QWGDEGKGK+VD L+ +AD++ R QGGNNAGHT+ V+ Y LLPSG++ Sbjct: 8 VVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKA 67 Query: 65 MSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSP 124 +S IG+ VV+ E E +G+ L I++ A L+ H+ +D L+E Sbjct: 68 VSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQA 127 Query: 125 -CGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEKEV 183 G +IGTT++GIGP Y + R +R+ DL + L H + + F E+ Sbjct: 128 QEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQH--QSMFPTLEI 185 Query: 184 LYKTILEELMYAREKILPFMDVIWSLLERESRKGA-HILFEGAQGFLLDNDHGTYPFVTS 242 + L+ L E+I P + + +L EGA LLD D GTYPFVTS Sbjct: 186 DVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTYPFVTS 245 Query: 243 SNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTV 302 SN G GI P ++G V GVVKAYTTRVG G FPTE N+ GD L+ G E+G Sbjct: 246 SNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVT 305 Query: 303 TNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDD 362 T R+RRCGWLDL +R + ++NG +ALTKLD+LD L E+K+ + Y+++G+ + + P + Sbjct: 306 TGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPAN 365 Query: 363 SIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPEREN 422 + E Y L GWK T G R + DLP QA++Y+R +E + V V + +G RE+ Sbjct: 366 QEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRES 425 Query: 423 TLIM 426 + + Sbjct: 426 MIQL 429 >d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 424 Score = 424 bits (1090), Expect = e-120 Identities = 164/429 (38%), Positives = 234/429 (54%), Gaps = 11/429 (2%) Query: 2 TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVR 61 V ++G QWGDEGKGKI+D LSE +D+ RF GG NAGHT+ VND Y L LLP GV+ Sbjct: 2 NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLY 61 Query: 62 PDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGA 121 + +S++G+ +V+ + + EIES+ + + + L ++N A ++ IH+ +D ++E Sbjct: 62 DNNISVLGNGMVIHVKSLMEEIESVGGKLL----DRLYLSNKAHILFDIHQIIDSIQETK 117 Query: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEK 181 G IGTT+RGIGP Y + R IR+ L + E+ +L+ H L Sbjct: 118 KLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYN---IT 174 Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 E + L K+ + + S + +L EGA +LD D GTYP+VT Sbjct: 175 EYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVT 234 Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301 SS T G GI L V+GVVK+Y TRVG GPF TEL N G +L+E G E+GT Sbjct: 235 SSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGT 294 Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGR----EVD 357 T R RRCGWLD+ + IN + I LTKLDVL GL+E+ +CV ++ E Sbjct: 295 TTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKG 354 Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417 P + +EPVY GWK+ + F +LP A+ YI IE+ L+ P+ + +G Sbjct: 355 CYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGVG 414 Query: 418 PERENTLIM 426 P R+N ++ Sbjct: 415 PNRKNMIVK 423 >d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 429 Score = 410 bits (1054), Expect = e-115 Identities = 162/428 (37%), Positives = 237/428 (55%), Gaps = 6/428 (1%) Query: 1 MTNV-VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVND-IVYKLSLLPSG 58 ++ V V+G QWGDEGKGK+VD L+++ D++ R QGG NAGHT+ ++ + L L+PSG Sbjct: 4 LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSG 63 Query: 59 VVRPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLR 118 ++ D +IG+ VVV EI+ L G+ L L + Sbjct: 64 ILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRE 123 Query: 119 EGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178 + IGTT+RGIGPAY +V R IRV DL ++ + +K++ LL A + F Sbjct: 124 S---ELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGF 180 Query: 179 GEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 + + +E +++ P++ + + +L EG Q +LD D GTYP Sbjct: 181 KYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 240 Query: 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKE 298 FVTSS+ + G GI+P +G ++GVVKAYTTRVG GPFPTE GD L+ G+E Sbjct: 241 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQE 300 Query: 299 FGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVD 357 FGT T R RRCGWLD+ +++ S ING + LTKLDVL L+E+++ V Y+ DG V Sbjct: 301 FGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVK 360 Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417 P D Y +L GWK + +R ++DLP A+ Y+ +IEE++ VP+ + IG Sbjct: 361 SFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIG 420 Query: 418 PERENTLI 425 P R+ + Sbjct: 421 PGRDALIY 428 >d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Score = 27.0 bits (59), Expect = 3.0 Identities = 4/20 (20%), Positives = 12/20 (60%) Query: 67 IIGSSVVVDPHAFISEIESL 86 I+GS+ ++ P + ++ + Sbjct: 568 ILGSTHILTPEGLLRDLRKI 587 >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} Length = 180 Score = 27.1 bits (59), Expect = 3.1 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 18/72 (25%) Query: 344 KICVGYRMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRK- 402 + + + P + Y R P+Y + G Q +RK Sbjct: 124 SNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQ----------------KQMRKI 167 Query: 403 IEEVLE-VPVAL 413 EE + + +L Sbjct: 168 FEENIPSLCCSL 179 >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Score = 26.9 bits (59), Expect = 3.6 Identities = 5/20 (25%), Positives = 12/20 (60%) Query: 67 IIGSSVVVDPHAFISEIESL 86 +IGS+ ++ P + ++ L Sbjct: 563 LIGSTHILTPQKLLDTLKKL 582 >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Score = 26.6 bits (58), Expect = 4.4 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 67 IIGSSVVVDPHAFISEIESL 86 + GS+ + P F++EI L Sbjct: 628 MYGSTAITTPAEFLNEISRL 647 >d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Length = 265 Score = 26.2 bits (57), Expect = 5.2 Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 100 IANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEH 159 I ++ ++ H ++D++ G +G + G I + Sbjct: 89 IKHDIAVY-VSHTNIDIVENGLNDWFCQMLGIEETTYLQETGPERGIGRIGNIQPQTFWE 147 Query: 160 ISKKIEQLLLHHNALRRSFGEKEVLYKTI 188 ++++++Q + ++LR +++ L K I Sbjct: 148 LAQQVKQ-VFDLDSLRMVHYQEDDLQKPI 175 >d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} Length = 109 Score = 26.2 bits (57), Expect = 5.7 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 3/19 (15%) Query: 5 VVVGLQWGDEGK---GKIV 20 ++ GL WG +G GK++ Sbjct: 8 IIQGLVWGTKGLANEGKVI 26 >d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Score = 25.5 bits (56), Expect = 7.6 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 173 ALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERE 213 +R + LY ++E ++ + E+ L + LL Sbjct: 63 GSQR-YKLGVRLYYRVMESMLKSEEERLSIQNFS-KLLNDN 101 >d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]} Length = 223 Score = 25.2 bits (55), Expect = 9.8 Identities = 5/21 (23%), Positives = 10/21 (47%) Query: 401 RKIEEVLEVPVALLSIGPERE 421 V +VP+ L+ + + E Sbjct: 155 LAEYNVFDVPIRLVGLIEDFE 175 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.139 0.408 Gapped Lambda K H 0.267 0.0641 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,657,718 Number of extensions: 80674 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 19 Length of query: 432 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 344 Effective length of database: 1,199,356 Effective search space: 412578464 Effective search space used: 412578464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)