254780614
F0F1 ATP synthase subunit epsilon
GeneID in NCBI database: | 8209614 | Locus tag: | CLIBASIA_02505 |
Protein GI in NCBI database: | 254780614 | Protein Accession: | YP_003065027.1 |
Gene range: | +(660178, 660585) | Protein Length: | 135aa |
Gene description: | F0F1 ATP synthase subunit epsilon | ||
COG prediction: | [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) | ||
KEGG prediction: | atpC; F0F1 ATP synthase subunit epsilon (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] | ||
SEED prediction: | ATP synthase epsilon chain (EC 3.6.3.14) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | F0F1-type ATP synthase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | |||
315121814 | 140 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | 1 | 1e-44 | |
319780918 | 135 | ATP synthase F1 subunit epsilon [Mesorhizobium ciceri b | 1 | 5e-23 | |
15889876 | 136 | F0F1 ATP synthase subunit epsilon [Agrobacterium tumefa | 1 | 1e-21 | |
227823625 | 134 | F0F1 ATP synthase subunit epsilon [Sinorhizobium fredii | 1 | 1e-21 | |
15966786 | 136 | F0F1 ATP synthase subunit epsilon [Sinorhizobium melilo | 1 | 2e-21 | |
325293990 | 136 | F0F1 ATP synthase subunit epsilon [Agrobacterium sp. H1 | 1 | 3e-21 | |
307301614 | 134 | ATP synthase F1, epsilon subunit [Sinorhizobium melilot | 1 | 4e-21 | |
222150024 | 135 | F0F1 ATP synthase subunit epsilon [Agrobacterium vitis | 1 | 1e-20 | |
190893715 | 135 | ATP synthase, epsilon subunit [Rhizobium etli CIAT 652] | 1 | 1e-20 | |
222087436 | 135 | ATP synthase F1, epsilon subunit [Agrobacterium radioba | 1 | 3e-20 |
>gi|315121814|ref|YP_004062303.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 140 | Back alignment and organism information |
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Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 84/135 (62%), Positives = 107/135 (79%) Query: 1 MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCE 60 MSL+N HFELVSP++C+FSGEV+SV+LPSE GD+T LVGH+ VL T+K GI+T+SLSC Sbjct: 1 MSLINSFHFELVSPKRCIFSGEVKSVILPSESGDMTALVGHSAVLATMKPGIITVSLSCG 60 Query: 61 EIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM 120 + HRYVVIGG+CDI+PS CTVL+ET+ +D CL+ LE R+DE L +I D DQR Q+ Sbjct: 61 DAHRYVVIGGVCDIMPSRCTVLTETVFSIDQVCLKTLENRMDETRDVLGSIYDSDQRSQL 120 Query: 121 EQLLVDLSCLRRRIQ 135 EQ LVDLS L R++ Sbjct: 121 EQFLVDLSYLYSRVR 135 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|319780918|ref|YP_004140394.1| ATP synthase F1 subunit epsilon [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 135 | Back alignment and organism information |
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>gi|15889876|ref|NP_355557.1| F0F1 ATP synthase subunit epsilon [Agrobacterium tumefaciens str. C58] Length = 136 | Back alignment and organism information |
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>gi|227823625|ref|YP_002827598.1| F0F1 ATP synthase subunit epsilon [Sinorhizobium fredii NGR234] Length = 134 | Back alignment and organism information |
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>gi|15966786|ref|NP_387139.1| F0F1 ATP synthase subunit epsilon [Sinorhizobium meliloti 1021] Length = 136 | Back alignment and organism information |
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>gi|325293990|ref|YP_004279854.1| F0F1 ATP synthase subunit epsilon [Agrobacterium sp. H13-3] Length = 136 | Back alignment and organism information |
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>gi|307301614|ref|ZP_07581373.1| ATP synthase F1, epsilon subunit [Sinorhizobium meliloti BL225C] Length = 134 | Back alignment and organism information |
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>gi|222150024|ref|YP_002550981.1| F0F1 ATP synthase subunit epsilon [Agrobacterium vitis S4] Length = 135 | Back alignment and organism information |
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>gi|190893715|ref|YP_001980257.1| ATP synthase, epsilon subunit [Rhizobium etli CIAT 652] Length = 135 | Back alignment and organism information |
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>gi|222087436|ref|YP_002545973.1| ATP synthase F1, epsilon subunit [Agrobacterium radiobacter K84] Length = 135 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
PRK14736 | 133 | PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Prov | 6e-22 | |
PRK00571 | 135 | PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Vali | 2e-20 | |
COG0355 | 135 | COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit | 5e-18 | |
PRK13448 | 135 | PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Prov | 4e-17 | |
PRK13443 | 136 | PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Prov | 2e-13 | |
KOG1758 | 159 | KOG1758, KOG1758, KOG1758, Mitochondrial F1F0-ATP synth | 6e-10 | |
TIGR01216 | 130 | TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subu | 1e-16 | |
PRK13449 | 88 | PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Prov | 2e-16 | |
PRK13446 | 136 | PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Prov | 3e-12 | |
PRK13442 | 89 | PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Prov | 2e-10 | |
PRK13444 | 127 | PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Prov | 9e-09 | |
PRK13452 | 145 | PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Prov | 1e-06 | |
PRK14735 | 139 | PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Prov | 1e-06 | |
CHL00063 | 134 | CHL00063, atpE, ATP synthase CF1 epsilon subunit | 1e-05 | |
PRK01474 | 112 | PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Vali | 2e-05 | |
PRK13450 | 132 | PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Prov | 3e-05 | |
pfam02823 | 80 | pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon c | 2e-18 |
>gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|179070 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>gnl|CDD|30704 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|106400 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|36969 KOG1758, KOG1758, KOG1758, Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria) | Back alignment and domain information |
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>gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|177003 CHL00063, atpE, ATP synthase CF1 epsilon subunit | Back alignment and domain information |
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>gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>gnl|CDD|145793 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
PRK13446 | 135 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
PRK13450 | 132 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
PRK13448 | 135 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
PRK13452 | 145 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
PRK00571 | 135 | atpC F0F1 ATP synthase subunit epsilon; Validated | 100.0 | |
PRK13443 | 136 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
CHL00063 | 133 | atpE ATP synthase CF1 epsilon subunit | 100.0 | |
PRK13445 | 132 | consensus | 100.0 | |
PRK13444 | 127 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 100.0 | |
PRK01474 | 112 | atpC F0F1 ATP synthase subunit epsilon; Validated | 99.98 | |
COG0355 | 135 | AtpC F0F1-type ATP synthase, epsilon subunit (mitochond | 99.98 | |
PRK00539 | 130 | atpC F0F1 ATP synthase subunit epsilon; Validated | 99.97 | |
PRK13451 | 101 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 99.96 | |
KOG1758 | 159 | consensus | 99.92 | |
TIGR03166 | 122 | alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsil | 99.89 | |
PRK13447 | 147 | F0F1 ATP synthase subunit epsilon; Provisional | 99.89 | |
PRK06228 | 130 | F0F1 ATP synthase subunit epsilon; Validated | 99.84 | |
TIGR01216 | 131 | ATP_synt_epsi ATP synthase F1, epsilon subunit; InterPr | 99.77 | |
PRK13442 | 91 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 99.95 | |
PRK13449 | 88 | atpC F0F1 ATP synthase subunit epsilon; Provisional | 99.93 | |
pfam02823 | 80 | ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-s | 99.89 | |
pfam00401 | 48 | ATP-synt_DE ATP synthase, Delta/Epsilon chain, long alp | 93.96 |
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>CHL00063 atpE ATP synthase CF1 epsilon subunit | Back alignment and domain information |
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>PRK13445 consensus | Back alignment and domain information |
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>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion] | Back alignment and domain information |
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>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>KOG1758 consensus | Back alignment and domain information |
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>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon | Back alignment and domain information |
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>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK06228 F0F1 ATP synthase subunit epsilon; Validated | Back alignment and domain information |
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>TIGR01216 ATP_synt_epsi ATP synthase F1, epsilon subunit; InterPro: IPR001469 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
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>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional | Back alignment and domain information |
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>pfam02823 ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain | Back alignment and domain information |
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>pfam00401 ATP-synt_DE ATP synthase, Delta/Epsilon chain, long alpha-helix domain | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
1aqt_A | 138 | Molecular Architecture Of The Rotary Motor In Atp S | 9e-25 | |
1bsh_A | 138 | Solution Structure Of The Epsilon Subunit Of The F1 | 1e-24 | |
2qe7_H | 135 | Crystal Structure Of The F1-Atpase From The Thermoa | 3e-23 | |
2e5y_A | 133 | Epsilon Subunit And Atp Complex Of F1f0-Atp Synthas | 9e-23 | |
2rq7_A | 134 | Solution Structure Of The Epsilon Subunit Chimera C | 3e-22 | |
2w6i_H | 168 | Low Resolution Structures Of Bovine Mitochondrial F | 2e-15 | |
2xnd_H | 131 | Crystal Structure Of Bovine F1-C8 Sub-Complex Of At | 5e-15 | |
1e79_H | 146 | Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcar | 8e-15 | |
2xok_H | 160 | Refined Structure Of Yeast F1c10 Atpase Complex To | 1e-13 | |
3oe7_H | 137 | Structure Of Four Mutant Forms Of Yeast F1 Atpase: | 3e-13 | |
2hld_H | 138 | Crystal Structure Of Yeast Mitochondrial F1-Atpase | 4e-13 | |
2rq6_A | 138 | Solution Structure Of The Epsilon Subunit Of The F1 | 4e-16 |
>gi|157830030|pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli Length = 138 | Back alignment and structure |
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 + H ++VS E+ +FSG V+ + + G++ + GHAP+LT IK G++ I Sbjct: 2 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 61 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDL-NNICDVDQRFQMEQL 123 + GGI ++ P + TVL++T + + + + + ++ DVD +L Sbjct: 62 IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121 Query: 124 LVDLSCLR 131 ++ LR Sbjct: 122 AKAIAQLR 129 |
>gi|6729899|pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1- Atpsynthase From Escherichia Coli And Orientation Of The Subunit Relative To The Beta Subunits Of The Complex Length = 138 | Back alignment and structure |
>gi|158430157|pdb|2QE7|H Chain H, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 135 | Back alignment and structure |
gi|152149010|pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From The Thermophilic Bacillus Ps3 Length = 133 | Back alignment and structure |
>gi|283806761|pdb|2RQ7|A Chain A, Solution Structure Of The Epsilon Subunit Chimera Combining The N-Terminal Beta-Sandwich Domain From T. Elongatus Bp-1 F1 And The C-Terminal Alpha-Helical Domain From Spinach Chloroplast F1 Length = 134 | Back alignment and structure |
gi|262118401|pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 4b. Length = 168 | Back alignment and structure |
>gi|306991571|pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 131 | Back alignment and structure |
>gi|11514063|pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd (Dicyclohexylcarbodiimide) Length = 146 | Back alignment and structure |
gi|307568105|pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 160 | Back alignment and structure |
>gi|306991956|pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 137 | Back alignment and structure |
>gi|119389911|pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 138 | Back alignment and structure |
gi|283806760|pdb|2RQ6|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-Atpase From Thermosynechococcus Elongatus Bp-1 Length = 138 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
2rq6_A | 138 | ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPas | 3e-22 | |
2qe7_H | 135 | ATP synthase subunit epsilon; blockage of ATP hydrolysi | 1e-20 | |
1aqt_A | 138 | ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A | 4e-20 | |
2xok_H | 160 | ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitoc | 4e-19 | |
2w6j_H | 168 | F1-ATPase delta subunit; ATP phosphorylase (H+ transpor | 8e-19 | |
2ck3_H | 146 | ATP synthase delta chain; ATP phosphorylase, ATP phosph | 9e-19 | |
2e5y_A | 133 | ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPas | 2e-18 | |
2hld_H | 138 | ATP synthase delta chain, mitochondrial; ATP phosphoryl | 4e-17 | |
3oee_H | 138 | ATP synthase subunit delta; ATP phosphatase, F1F0 ATPas | 4e-17 |
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138 | Back alignment and structure |
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Score = 99.1 bits (247), Expect = 3e-22 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 1/129 (0%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 + +++P+K V+ + V+LPS G + +L HAP+LT +++G++ + E + Sbjct: 3 MTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVA-IA 61 Query: 67 VIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVD 126 ++GG ++ + T+L D L+ + + L + + Q Sbjct: 62 LMGGFAEVENNEVTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQA 121 Query: 127 LSCLRRRIQ 135 R R+Q Sbjct: 122 FRRARARLQ 130 |
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135 | Back alignment and structure |
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>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E Length = 138 | Back alignment and structure |
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>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160 | Back alignment and structure |
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>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168 | Back alignment and structure |
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>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* Length = 146 | Back alignment and structure |
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>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133 | Back alignment and structure |
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>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H Length = 138 | Back alignment and structure |
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>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3oe7_H* Length = 138 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
1aqt_A | 138 | ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A | 100.0 | |
2rq6_A | 138 | ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPas | 99.98 | |
2e5y_A | 133 | ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPas | 99.97 | |
2xok_H | 160 | ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitoc | 99.97 | |
2qe7_H | 135 | ATP synthase subunit epsilon; blockage of ATP hydrolysi | 99.97 | |
3oee_H | 138 | ATP synthase subunit delta; ATP phosphatase, F1F0 ATPas | 99.96 | |
2ck3_H | 146 | ATP synthase delta chain; ATP phosphorylase, ATP phosph | 99.95 | |
2w6j_H | 168 | F1-ATPase delta subunit; ATP phosphorylase (H+ transpor | 99.95 |
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E | Back alignment and structure |
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Probab=100.00 E-value=1.6e-32 Score=222.42 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=114.1 Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998 Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135) Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135) ++||+|+||||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++..++.+..|+|+|||++|.+|.|+||+ T Consensus 1 ~~Tf~l~IvtP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~~v~Ila 80 (138) T 1aqt_A 1 GSTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 80 (138) T ss_dssp -CCEEEEEEESSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEE T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCCCEEEECCCEEEEEECCCCEEEEEEECCEEEECCCEEEEEE T ss_conf 95699999979964883578999997694670634897212144016779999759978999983889998199599993 Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHHHHHH Q ss_conf 1122076859999999999999996507888999999----9999999999886 Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQM----EQLLVDLSCLRRR 133 (135) Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~----~~~~~~l~~~r~~ 133 (135) ++|++.++||.+++++.+++|+++|++..++.+..++ .+++.+++.+++. T Consensus 81 ~~a~~~~~Id~~~~~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~ 134 (138) T 1aqt_A 81 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELT 134 (138) T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 530883549999999999999999862877399999999999999999999998 |
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A | Back alignment and structure |
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>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A | Back alignment and structure |
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>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} | Back alignment and structure |
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>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} | Back alignment and structure |
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>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3oe7_H* | Back alignment and structure |
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>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H* | Back alignment and structure |
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>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | |||
d1aqta2 | 85 | b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase | 3e-18 | |
d2jdih2 | 85 | b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthas | 2e-15 |
>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
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class: All beta proteins fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain family: Epsilon subunit of F1F0-ATP synthase N-terminal domain domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain species: Escherichia coli [TaxId: 562] Score = 84.4 bits (209), Expect = 3e-18 Identities = 27/81 (33%), Positives = 47/81 (58%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 + H ++VS E+ +FSG V+ + + G++ + GHAP+LT IK G++ I Sbjct: 1 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 60 Query: 65 YVVIGGICDIVPSHCTVLSET 85 + GGI ++ P + TVL++T Sbjct: 61 IYLSGGILEVQPGNVTVLADT 81 |
>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 85 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
d1aqta2 | 85 | Epsilon subunit of F1F0-ATP synthase N-terminal domain | 99.92 | |
d2jdih2 | 85 | Epsilon subunit of F1F0-ATP synthase N-terminal domain | 99.83 | |
d1aqta1 | 50 | Epsilon subunit of F1F0-ATP synthase C-terminal domain | 92.14 |
>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain family: Epsilon subunit of F1F0-ATP synthase N-terminal domain domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain species: Escherichia coli [TaxId: 562] Probab=99.92 E-value=3.4e-25 Score=175.19 Aligned_cols=85 Identities=32% Similarity=0.556 Sum_probs=82.0 Q ss_pred CEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE Q ss_conf 40269998488637522131999960573357768980026670688079962688403542267569994996999981 Q gi|254780614|r 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135) Q Consensus 5 ~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135) +||+|+|+||++.+|+++|++|++|+.+|+|||||||+|+|+.|.||+++|+.++++++.|+|+|||++|.+|+|+||++ T Consensus 1 ~Tf~l~IvtP~~~~~~~~v~~v~~~~~~G~~gIL~~H~p~i~~L~~g~v~i~~~~~~~~~~~v~gG~~~v~~n~v~Il~~ 80 (85) T d1aqta2 1 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLAD 80 (85) T ss_dssp CCEEEEEEESSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEES T ss_pred CEEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCCEEEEECCCEEEEEECCCCEEEEEECCCEEEEECCEEEEEEE T ss_conf 95999999898669965789999977947778968983306882287799998799799999936399998999999992 Q ss_pred CCEEH Q ss_conf 12207 Q gi|254780614|r 85 TILPM 89 (135) Q Consensus 85 ~a~~~ 89 (135) .|+.. T Consensus 81 ~A~rg 85 (85) T d1aqta2 81 TAIRG 85 (85) T ss_dssp SEEEG T ss_pred EEECC T ss_conf 53229 |
>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Libe | ||
1aqt_A_ | 138 | (A:) ATP synthase; hydrolase, ATPase, epsilon subu | 6e-23 | |
2qe7_H_ | 135 | (H:) ATP synthase subunit epsilon; blockage of ATP | 3e-22 | |
2e5y_A_ | 133 | (A:) ATP synthase epsilon chain; F1FO ATP synthase | 8e-22 | |
2hld_H_ | 138 | (H:) ATP synthase delta chain, mitochondrial; ATP | 6e-21 | |
2rq6_A_1-86 | 86 | (A:1-86) ATP synthase epsilon chain; F1FO ATP synt | 7e-19 | |
2ck3_H_1-100 | 100 | (H:1-100) ATP synthase delta chain; ATP phosphoryl | 1e-16 | |
2w6j_H_1-123 | 123 | (H:1-123) F1-ATPase delta subunit; ATP phosphoryla | 2e-16 |
>1aqt_A (A:) ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli}Length = 138 | Back alignment and structure |
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Score = 100 bits (251), Expect = 6e-23 Identities = 29/120 (24%), Positives = 56/120 (46%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 + H ++VS E+ +FSG V+ + + G++ + GHAP+LT IK G++ I Sbjct: 2 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 61 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 + GGI ++ P + TVL++T + + + + +++ Q L Sbjct: 62 IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121 |
>2qe7_H (H:) ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}Length = 135 | Back alignment and structure |
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>2e5y_A (A:) ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_ALength = 133 | Back alignment and structure |
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>2hld_H (H:) ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_HLength = 138 | Back alignment and structure |
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>2rq6_A (A:1-86) ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_ALength = 86 | Back alignment and structure |
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>2ck3_H (H:1-100) ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus}Length = 100 | Back alignment and structure |
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>2w6j_H (H:1-123) F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_HLength = 123 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 135 | F0F1 ATP synthase subunit epsilon [Candidatus Liberibac | ||
1aqt_A_ | 138 | ATP synthase; hydrolase, ATPase, epsilon subunit; | 99.98 | |
2e5y_A_ | 133 | ATP synthase epsilon chain; F1FO ATP synthase, F1- | 99.97 | |
2hld_H_ | 138 | ATP synthase delta chain, mitochondrial; ATP phosp | 99.96 | |
2qe7_H_ | 135 | ATP synthase subunit epsilon; blockage of ATP hydr | 99.96 | |
2rq6_A_1-86 | 86 | ATP synthase epsilon chain; F1FO ATP synthase, F1- | 99.9 | |
2w6j_H_1-123 | 123 | F1-ATPase delta subunit; ATP phosphorylase (H+ tra | 99.89 | |
2ck3_H_1-100 | 100 | ATP synthase delta chain; ATP phosphorylase, ATP p | 99.88 |
>1aqt_A (A:) ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} | Back alignment and structure |
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Probab=99.98 E-value=9.2e-31 Score=212.38 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=113.3 Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998 Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135) Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135) +++|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++..++.+..|+|+|||++|.+|+|+|++ T Consensus 1 a~~l~l~IvtP~~~~~~~~v~~v~~~t~~G~~gILp~H~p~it~L~~G~i~i~~~~~~~~~~~v~gG~~~v~~~~v~I~~ 80 (138) T 1aqt_A 1 GSTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 80 (138) T ss_dssp -CCEEEEEEESSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEE T ss_pred CCEEEEEEECCCCEEEECEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEEECCCCEEEEEEECCEEEECCCEEEEEH T ss_conf 96599999989855882457899997694375776898240231436579999859979999984889996699599992 Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 11220768599999999999999965078889999999999 Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 (135) Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~ 124 (135) ++|++.++||.+++++.++++++.+++..+..++..++..+ T Consensus 81 ~~a~~~~~id~~~~~~~~~~a~~~l~~~~~~~~~~~~e~~l 121 (138) T 1aqt_A 81 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121 (138) T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHH T ss_pred HHEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 14075502999999999999999987087708999999999 |
>2e5y_A (A:) ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A | Back alignment and structure |
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>2hld_H (H:) ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H | Back alignment and structure |
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>2qe7_H (H:) ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} | Back alignment and structure |
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>2rq6_A (A:1-86) ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A | Back alignment and structure |
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>2w6j_H (H:1-123) F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H | Back alignment and structure |
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>2ck3_H (H:1-100) ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} | Back alignment and structure |
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