HHsearch alignment for GI: 254780614 and conserved domain: PRK00539

>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated.
Probab=99.97  E-value=5.9e-30  Score=207.76  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=112.6

Q ss_pred             EEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf             26999848863752213199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r    7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI   86 (135)
Q Consensus         7 ~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a   86 (135)
T Consensus         2 lkl~ivtP~~~~~~~~V~~V~vktteG~~Gil~~h~Plit~I~~gv~~I~~~d~~~~~~~I~gGf~eV~~~~vtIlad~a   81 (130)
T PRK00539          2 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENF   81 (130)
T ss_pred             CCEEEECCCCEEECCCEEEEEEECCCCEEEECCCCCCEEEEECCEEEEEEECCCCEEEEEEECCEEEECCCEEEEEHHHC
T ss_conf             31699677715605816999996365346543798732788615089999679967899995368998474899993312


Q ss_pred             EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             20768599999999999999965078889999999999
Q gi|254780614|r   87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL  124 (135)
Q Consensus        87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~  124 (135)
T Consensus        82 e~~deID~dra~kaK~~aE~rlk~t~d~k~~ikl~~nl  119 (130)
T PRK00539         82 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL  119 (130)
T ss_pred             CCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             44012289999999999999860563106667688765