HHsearch alignment for GI: 254780614 and conserved domain: PRK00539
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated.
Probab=99.97 E-value=5.9e-30 Score=207.76 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=112.6
Q ss_pred EEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 26999848863752213199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 7 ~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
T Consensus 2 lkl~ivtP~~~~~~~~V~~V~vktteG~~Gil~~h~Plit~I~~gv~~I~~~d~~~~~~~I~gGf~eV~~~~vtIlad~a 81 (130)
T PRK00539 2 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENF 81 (130)
T ss_pred CCEEEECCCCEEECCCEEEEEEECCCCEEEECCCCCCEEEEECCEEEEEEECCCCEEEEEEECCEEEECCCEEEEEHHHC
T ss_conf 31699677715605816999996365346543798732788615089999679967899995368998474899993312
Q ss_pred EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 20768599999999999999965078889999999999
Q gi|254780614|r 87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 (135)
Q Consensus 87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~ 124 (135)
T Consensus 82 e~~deID~dra~kaK~~aE~rlk~t~d~k~~ikl~~nl 119 (130)
T PRK00539 82 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL 119 (130)
T ss_pred CCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 44012289999999999999860563106667688765