HHsearch alignment for GI: 254780614 and conserved domain: PRK13442
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=99.95 E-value=2.5e-27 Score=191.31 Aligned_cols=89 Identities=34% Similarity=0.442 Sum_probs=87.1
Q ss_pred CEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEE
Q ss_conf 40269998488637522131999960573357768980026670688079962688403542267569994996999981
Q gi|254780614|r 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSE 84 (135)
Q Consensus 5 ~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~ 84 (135)
T Consensus 3 ~t~~l~IvTPe~~~~~gev~~v~~p~~~G~~gILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~n~vtILad 82 (91)
T PRK13442 3 ATLHVNIVAADHEVWSGEATMVVARTTEGDIGVLPGHEPLLGVLASGTVTIVKSGGGRISAAVDGGFISVANNKVSVLAE 82 (91)
T ss_pred CEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCEEEEEEC
T ss_conf 48999999798519954648999988865720568982029998163899998999699999976499998999999976
Q ss_pred CCEEHHHCC
Q ss_conf 122076859
Q gi|254780614|r 85 TILPMDNAC 93 (135)
Q Consensus 85 ~a~~~~~iD 93 (135)
T Consensus 83 ~ae~~~eID 91 (91)
T PRK13442 83 RAELVQEID 91 (91)
T ss_pred EEECHHHCC
T ss_conf 039478799